@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20310: (2016-07-02 )
MKCIQIEMSFTDEYGQVTRLNKTYKPSIIEEHKGEIPRLLLDDFKRFLSSLGFNEKQVSRIVTED
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......------...10.....--...20........-----30........-40...-.....50........60....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
C
I
Q
I
------
E
M
SFTDEYGQ--VTRLNKTYK
P
S
I
I
-----
E
E
HKGEI
P
R
L
-
L
L
D
D
F
-
K
R
F
L
S
SLGF
N
E
K
Q
V
S
R
I
VTED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
57.24
12%
26
- C3 -
3UGM
-
PTHX1_XANOP
A:
[169-1048]
KPKVRELVAHIVALSQHPAALGTVAVTYQHIITALAT
H
E
D
I
V
G
V
G
KQWSG
A
R
A
L
E
A
L
L
T
D
A
G
E
L
RGPPLQLDT
G
Q
L
V
K
I
A
K
R
GG
V
T
A
M
E
A
V
H
A
SRNALTPLNLT
P
A
Q
V
V
A
I
A
SNNG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
A
HGLTPA
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
M
Q
R
L
L
P
V
L
C
Q
A
HGLP
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
PVLCQAHGLT
P
D
Q
V
V
A
I
A
SHGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
------
V
Q
R
L
L
P
V
L
C
Q
--
A
H
G
L
T
P
D
Q
V
V
A
I
A
-----
S
N
G
G
K
Q
A
L
E
T
-
V
Q
R
L
L
-
P
V
L
C
Q
A
H
G
L
T
P
D
Q
V
V
A
I
A
S
H
D
G
G
K
Q
A
L
E
T
V
Q
R
LL
P
V
L
C
Q
THGLT
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
Q
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
A
T
V
Q
R
LLPVLCQAHGLTPDQV
V
A
I
A
S
N
GGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLTQVQVVAIASNIGGKQA
L
E
T
V
Q
R
L
LPVLCQA
H
G
L
T
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
IASNGG
G
K
Q
A
L
E
T
V
Q
R
LLPGLT
Q
E
Q
V
V
A
I
A
SNNGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLT
L
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
LPVLCQGLT
Q
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQDHGLT
P
D
Q
V
V
A
I
A
S
NIGGKQ
A
L
E
T
V
Q
R
L
L
PVLCQDHGLT
L
D
Q
V
V
A
I
A
S
N
GGK
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLTPDQVVAIASNSG
24
Fugue
47.74
20%
-41
- C3 -
2HIN
2
?
A:
[1-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
P
E
E
L
------
V
R
H
F
G
D
V
E
K
A
--
A
V
G
V
G
V
T
P
G
A
V
Y
Q
-----
W
L
Q
A
G
E
I
P
P
L
-
R
Q
S
D
I
-
E
V
R
T
A
Y
K
L
K
S
D
F
T
S
Q
R
M
G
K
E
G
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
46.86
20%
45
- C3 -
3CM8
1
?
A:
[12-471]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IEPFLKTTPR
P
L
R
L
P
D
G
P
P
C
S
Q
R
S
KFLLMD
A
L
K
L
S
I
------
E
I
P
L
Y
D
A
I
K
C
--
M
K
T
F
F
G
W
K
E
P
N
I
V
-----
K
P
H
E
K
G
I
N
P
N
-
Y
L
L
A
W
-
K
Q
V
L
A
E
L
Q
D
I
E
N
E
E
K
I
P
K
T
K
N
MRKT
S
Q
L
K
W
A
L
GENMAPEKVDFED
C
K
D
V
SEP
K
P
R
S
L
AS
W
I
Q
S
E
F
N
K
A
C
ELTDSSWIELDEIIA
S
M
R
R
N
Y
F
T
A
E
V
S
HC
R
A
T
E
Y
I
M
K
G
V
Y
I
N
T
A
L
L
N
A
S
C
A
AMDDF
Q
L
I
P
M
I
S
K
C
R
T
KEG
R
R
K
T
N
L
Y
G
F
I
I
K
G
RSHLRNDT
D
V
V
N
F
V
S
M
E
F
S
LTDPRLEPHKWEK
Y
C
V
L
EI
G
D
M
L
L
R
T
AI
G
Q
V
S
R
P
M
F
L
Y
V
R
T
N
G
T
S
K
I
K
M
K
W
G
M
E
MR
R
C
L
L
Q
S
L
Q
Q
I
E
S
M
I
E
A
ESSVKEKDM
T
K
E
F
F
E
NKSETWPIGESPK
G
M
E
E
G
S
I
G
K
V
C
R
T
L
L
A
K
S
V
F
N
S
L
Y
AS
P
Q
L
E
G
F
S
A
E
S
R
K
L
L
L
I
V
Q
A
L
R
D
NLEPGTFD
L
G
G
L
Y
E
A
I
E
E
C
LIND
P
W
V
L
L
N
A
S
W
F
N
S
F
L
T
H
A
L
K------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
46.77
10%
-216
- C4 -
1EW3
-
ALL1_HORSE
A:
[147-167]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
-
I
K
E
E
F
-
V
K
I
V
Q
K
R
G
I
V
K
E
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
46.47
22%
-206
- C4 -
2HLV
-
OBP_BOVIN
A:
[125-147]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
D
E
-
D
L
E
K
F
-
W
K
L
T
E
D
K
G
I
D
K
K
N
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
45.89
24%
81
- C- -
1O22
-
?
A:
[6-154]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
L
E
I
L
Y
Y
K
K
GKEF
G
I
L
E
K
K
M
K
E
I
F
N
E
TG
V
S
L
E
P
V
NSEL
I
G
R
I
F
L
K
I
S
V
L
E
EG
E
E
V
P
S
F
A
I
K
A
L
T
PKENAVDLPLG
D
W
T
D
L
K
N
V
F
V
E
------
E
I
D
Y
L
D
S
Y
G
D
M
K
I
L
S
E
K
N
W
Y
K
I
Y
V
P
-----
Y
S
S
V
K
K
K
N
R
N
E
L
V
E
E
F
M
K
Y
F
F
E
S
K
G
W
N
P
G
E
Y
T
F
S
V
Q
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
44.85
17%
-165
* C4 *
1LF7
-
CO8G_HUMAN
A:
[137-159]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
D
S
-
V
L
S
G
F
-
E
Q
R
V
Q
E
A
H
L
T
E
D
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
43.94
25%
-134
- C4 -
3O22
-
PTGDS_HUMAN
A:
[127-150]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
A
E
-
L
K
E
K
F
-
T
A
F
C
K
A
Q
G
F
T
E
D
T
I
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.81
26%
-93
- C4 -
4ORR
-
PTGDS_HUMAN
A:
[155-177]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
A
E
-
L
K
E
K
F
-
T
A
F
C
K
A
Q
G
F
T
E
D
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.36
30%
-168
- C4 -
1IXS
-
A:
[17-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
A
-
V
M
A
L
A
A
L
G
F
K
E
A
Q
A
R
A
V
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
42.30
25%
36
- C1 -
4AKA
-
?
A:
[19-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GADSC
K
Y
C
L
Q
L
Y
DETYE
R
G
S
Y
I
E
V
Y
K
S
--
V
G
S
L
S
P
P
W
T
P
G
S
V
C
V
P
F
V
N
D
T
K
R
E
R
P
Y
W
-
Y
L
F
D
N
-
V
N
Y
----------
T
G
R
I
T
G
L
G
HGTCIDDFTKSGFKGIS
S
I
K
R
C
I
Q
T
KDG
K
V
E
C
I
NQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.84
44%
15
- C4 -
1T5C
2
CENPE_HUMAN
A:
[84-130]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
Q
---
T
A
S
G
K
T
Y
T
M
M
G
S
-----
E
D
H
L
G
V
I
P
R
A
-
I
H
D
I
F
-
Q
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.70
24%
-182
- C4 -
3KQ0
1
A1AG1_HUMAN
A:
[132-156]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
T
K
E
-
Q
L
G
E
F
-
Y
E
A
L
D
C
L
R
I
P
K
S
D
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.18
17%
-148
- C4 -
4ODD
-
?
B:
[123-145]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
E
E
-
D
I
A
K
F
-
K
K
L
S
R
E
K
G
I
P
E
E
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
40.83
4%
-278
- C4 -
1E5P
-
APHR_CRICR
A:
[118-140]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
E
-
E
N
E
I
L
-
V
Q
F
A
H
E
K
K
I
P
V
E
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.40
13%
-41
- C- -
4WFV
-
ALL2_BOVIN
A:
[123-145]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
P
E
-
E
L
E
K
Y
-
Q
Q
L
N
S
E
R
G
V
P
N
E
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
40.25
21%
-12
- C3 -
2LE2
-
?
A:
[1-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
------
Q
N
D
F
V
D
S
Y
D
V
--
T
M
L
L
Q
D
D
D
G
K
Q
Y
Y
-----
E
Y
H
K
G
----
L
-
S
L
S
D
F
-
E
V
L
Y
G
N
T
A
D
E
I
I
K
L
R
L
D
K
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.46
9%
-183
- C4 -
3SAO
-
EXFAB_CHICK
A:
[120-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
P
T
-
A
M
A
I
F
-
R
K
L
A
R
E
R
N
Y
T
D
E
M
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
38.71
17%
-155
- C4 -
4CK4
2
LACB_SHEEP
A:
[128-151]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
N
E
-
A
L
E
K
F
-
D
K
A
L
K
A
L
P
M
H
I
R
L
A
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
38.27
36%
-128
- C2 -
3M8E
-
?
A:
[25-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
V
------
L
M
A
F
I
N
E
N
G
E
--
A
Q
M
L
N
K
T
A
V
A
E
M
I
-----
Q
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------