@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28670: (2016-07-15 )
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVIITKEDETRLKGVKAGINLPVFFDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLEQSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSRRQMILIQGYEWSPHDIEQMARSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGRAVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALEHQELMNTIRTFFHHDLSLKQTAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVALYFLDQDTK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10.......-------.20...-..--...30........40...-.....50----------........60.-.......70....---..-..80-.-.-......90.-.....-..100.......110.......120........130.--........140.-.......150........160.......170-.-......180..-....-..190.......----200....-...210.......220-------.....-...230......---.240.-....-..250..-.....260.-.---.-.--..-.270.....-.-.280.......290.........----300---.--......310---........320.......330.-..------.-...340....-..-.350.......360..-....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
F
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-------YER
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-
I
V
--NTD
G
L
I
M
AGT
N
D
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R
VGQF-HE
G
A
L
I
C
----------AKER
R
S
V
I
I
TK-ED
E
T
R
L
K
GVKAGI---NL-
P
V
F
F-D-H-DV
I
A
V
FGLT-GEPAE-I
Q
P
F
G
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L
L
R
K
M
T
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L
F
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SRHL
E
-
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--
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A
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QGYEWS-
P
-
H
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-
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A
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----
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INHEV-P
Q
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--------
I
CSFA-NTASSQYTAAGA---GRAVA-SSSL-
T
D
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Y
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Q
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L
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LK-R---K-T--PI-
F
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L
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M
-
C
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F
--
P
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---
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QTAE
D
M
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I
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I
N
T
L
R
-
Y
R
------
L
-
A
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Q
LTGLR-FD-R
T
E
D
V
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M
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Y
F
LD-QDTK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
61.85
20%
-54
* C6 *
4NTC
1
?
A:
[2-326]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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-----
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---
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-
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F
-
Y
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V
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-
A
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A
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G
G
L
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A
Q
-
L
Q
A
Q
AL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
59.57
16%
-29
- C4 -
3ONQ
10
?
A:
[20-262]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
T
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L
--
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----
L
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M
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---
P
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C
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A
--------
V
M
-----
P
A
F
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E
D
E
P
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---
S
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A
-
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STP
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--
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-
A
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L
L
G
D
D
-
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A
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E
E
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--
Y
R
N
V
Y
Q
-
V
L
RGEN
P
D
D
---
P
--
T
Y
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S
T
F
----
L
K
Y
G
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R
-
Y
R
------
L
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A
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R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
56.90
20%
10
- C3 -
4OVY
9
?
A:
[1-305]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
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P
L
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N
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A
A
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A
-------
I
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--
T
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EQPMY
V
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M
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---
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Y
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--
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M
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A
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L
R
Q
H
E
-
F
---------------------
K
T
F
I
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G
A
G
I
E
-
F
--------M
R
P
W
-------
A
K
E
V
Y
G
I
P
P
E
Q
----
V
I
G
S
S
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L
K
Y
E
L
R
D
--------------------------------
G
K
---
P
V
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L
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-
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---
R
-
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M
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Y
-
E
M
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-------
P
A
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G
L
G
----------------------
L
I
----
V
H
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------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
55.20
15%
1
- C4 -
3ONQ
10
?
A:
[9-262]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
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D
-
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C
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----
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-
A
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D
Y
A
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E
L
--
Y
R
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V
Y
Q
V
L
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----
G
E
N
PDD
P
--
T
Y
L
T
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T
F
----
L
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R
------
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-
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---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
54.88
14%
31
* C5 *
1FUU
-
IF4A_YEAST
B:
[11-394]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QIQTNYDKVV
Y
K
F
D
D
M
E
L
D
E
N
L
L
R
G
V
F
G
Y
GFEEPSA
I
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R
A
I
M
P
I
IE
G
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M-
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K
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F
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V
N
V
-
E
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E
E
Y
K
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D
L
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D
SISVTQAV
I
F
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N
T
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R
R
K
V
E
E
L
T
T
K
L
R
---
N
D
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T
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-
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E
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E
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D
I
A
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L
L
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
53.29
21%
-164
- C4 -
3SZP
-
?
A:
[5-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
N
L
F
R
L
V
----
V
E
N
-
G
S
Y
T
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T
S
K
K
T
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I
P
V
A
T
I
T
-
R
R
------
I
-
Q
A
L
E
D
S
L
N
L
R
-
L
L
-
N
R
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
52.95
37%
-123
- C4 -
3ONQ
1
?
D:
[201-254]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
T
F
----
L
K
Y
G
S
S
L
E
N
T
A
K
E
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H
P
N
T
V
R
-
Y
R
------
L
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R
A
A
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G
W
D
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A
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Y
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L
T
T
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
52.54
11%
-150
- C4 -
3HHG
-
?
A:
[7-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
T
V
F
V
Q
V
----
V
E
-
S
G
S
F
S
R
A
A
E
Q
L
A
M
A
N
S
A
V
S
-
R
I
------
V
-
K
R
L
E
E
K
L
G
V
N
-
L
L
-
N
R
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
51.16
37%
-110
- C4 -
3ONQ
3
?
B:
[201-254]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
T
F
----
L
K
Y
G
S
S
L
E
N
T
A
K
E
L
N
V
H
P
N
T
V
R
-
Y
R
------
L
-
K
R
A
A
E
T
T
G
W
D
-
A
T
-
D
P
R
D
A
Y
V
L
T
T
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
51.10
10%
-191
- C4 -
2ESN
-
?
A:
[10-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
N
--
L
L
L
V
F
D
A
L
----
Y
R
-
H
R
N
V
G
T
A
A
S
E
L
A
I
S
A
S
A
F
S
-
H
A
------
L
-
G
R
L
R
Q
G
L
D
D
E
-
L
F
-
L
R
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
50.81
13%
-192
- C4 -
3FXQ
1
TSAR_COMTE
A:
[5-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
T
L
Q
A
L
I
C
I
----
E
E
V
-
G
S
L
R
A
A
A
Q
L
L
H
L
S
Q
P
A
L
S
-
A
A
------
I
-
Q
Q
L
E
D
E
L
K
A
P
-
L
L
-
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.45
37%
-121
- C4 -
3ONQ
2
?
A:
[201-254]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
T
F
----
L
K
Y
G
S
S
L
E
N
T
A
K
E
L
N
V
H
P
N
T
V
R
-
Y
R
------
L
-
K
R
A
A
E
T
T
G
W
D
-
A
T
-
D
P
R
D
A
Y
V
L
T
T
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
47.72
19%
54
- C5 -
2IPC
-
SECA_THET8
A:
[1-939]
MLGL
L
R
R
L
F
DN
N
E
R
E
I
A
R
Y
Y
K
Q
V
V
E
P
V
N
R
L
E
A
E
V
E
K
LPD
L
A
A
A
Y
R
E
L
K
E
K
H
E
K
GASLDEL
L
P
M
A
F
A
L
T
R
E
S
A
K
R
YLGMRHF
D
V
Q
L
I
G
G
A
V
L
H
E
G
K
I
A
E
M
K
T
G
E
G
K
T
L
V
A
T
L
A
V
A
L
N
A
L
TGK
G
V
H
V
V
T
VN
D
Y
L
A
R
R
D
A
E
W
M
G
P
V
Y
R
G
L
G
L
S
V
G
V
I
Q
HAST
P
A
E
R
R
K
A
Y
L
AD
V
T
Y
V
T
N
S
E
L
G
F
D
Y
L
R
D
N
M
AISPDQLVLRHDHPLH
Y
A
I
I
DEVDSILIDEAR
T
P
L
I
I
S
G
P
AEKA
T
D
L
Y
Y
K
M
A
E
I
A
K
K
L
E
R
G
L
P
A
EPGVRKEPTGDYTVEEKNRSVHLT
L
Q
G
I
A
K
A
E
K
L
LGI
E
G
L
F
S
P
EN
M
E
L
A
H
M
L
I
Q
A
I
R
A
K
E
LYHRDRD
Y
I
V
Q
DG
Q
V
I
I
V
D
EFTGRLMPG
R
R
Y
G
EGL
H
Q
A
I
E
A
K
E
GVRIER
E
N
Q
T
L
A
T
I
T
YQNFFRLYE
K
R
A
G
M
T
-
G
T
A
K
T
E
E
K
E
F
Q
E
I
-------
Y
G
M
D
V
V
-
V
V
--
P
T
N
R
P
V
I
R
K
D
F
P
D
V
V
Y
R
T
-
E
K
G
K
F
Y
A
----------
V
V
E
E
I
A
E
K
Y
E
R
-
G
Q
-----------------
P
V
L
V
G
T
-
I
-
S
I
E
K
S
E
R
L
S
-
Q
M
L
K
E
-
P
R
L
Y
L
P
R
L
E
M
R
L
E
L
F
K
K
A
S
Q
K
Q
Q
-
G
P
E
W
-
E
R
L
R
K
--
L
--
L
E
----------------
R
P
A
-
Q
L
K
D
E
D
L
A
P
F
E
G
L
I
P
------
P
-
K
-
G
N
L
R
T
A
W
-
E
G
L
-
K
R
A
V
-
H
T
L
A
V
L
R
Q
G
I
P
H
----
Q
V
L
N
----
A
K
H
H
A
R
E
A
---
E
I
V
A
--------
Q
A
G
R
S
-
K
T
V
T
I
A
T
N
M
A
G
R
---
G
T
D
I
K
-
L
G
G
--------
N
-
P
E
Y
L
A
A
A
L
L
-
E
---
K
-
E
--
G
F
-
D
R
Y
E
W
K
V
E
L
-
F
-
I
K
K
M
V
A
G
K
E
E
E
A
R
A
L
A
Q
E
L
G
I
R
E
----
E
L
L
---
E
--
R
I
R
E
I
R
E
E
----
C
K
Q
D
E
E
R
V
R
A
L
G
G
L
F
I
-
I
G
T
E
R
-
H
E
------
S
-
R
R
I
D
N
Q
L
R
G
R
-
A
G
-
R
Q
G
D
P
G
G
S
R
F
Y
V
S
F
D
D
-
D
L
M
R
LFAS
D
R
V
I
A
M
L
D
R
MGFDDS
E
P
I
E
H
P
M
V
T
R
S
I
E
R
A
Q
K
R
V
E
D
R
N
F
A
I
R
K
Q
L
L
Q
F
D
D
V
L
S
R
Q
R
E
V
I
Y
A
Q
R
R
L
I
L
L
GK
D
E
E
V
K
E
A
A
I
G
M
V
E
E
T
V
A
S
L
A
E
NFLNPEVHPEDWD
L
E
G
L
K
A
T
L
L
D
T
A
P
Q
L
Q
D
F
P
F
A
ELRALKA
E
E
A
V
E
R
L
V
E
A
A
L
K
A
Y
E
A
R
E
A
E
LS
P
P
L
M
R
A
V
E
R
F
V
I
L
N
V
V
D
N
A
W
K
E
H
L
H
N
L
D
V
L
R
Q
G
IFLRGYGQKD
P
F
Q
E
Y
K
I
E
A
T
R
L
F
N
E
M
V
A
F
I
K
S
E
V
A
K
F
L
F
R
LKVE
25
HHSearch
45.45
19%
-127
- C4 -
3ISP
-
Y1985_MYCTU
A:
[9-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
Q
L
A
A
L
A
A
V
----
V
E
-
L
G
S
F
D
A
A
A
E
R
L
H
V
T
P
S
A
V
S
-
Q
R
------
I
-
K
S
L
E
Q
Q
V
G
Q
V
-
L
V
-
V
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.23
27%
-92
- C4 -
4DWD
-
?
A:
[144-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
E
V
A
-
R
R
V
-
E
A
E
Q
-
P
A
A
V
K
I
R
W
D
G
D
R
----
T
R
C
D
V
D
I
-
P
G
D
I
A
K
A
R
A
V
R
E
L
L
G
PD
A
-----
V
I
G
F
---
D
A
N
N
G
Y
S
V
G
G
A
I
R
V
G
R
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
42.50
15%
-163
- C4 -
2JPC
-
?
A:
[24-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
E
G
Y
T
N
H
G
I
S
E
K
L
H
I
S
I
K
T
V
E
-
T
H
------
R
-
M
N
M
M
R
K
L
Q
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.45
27%
-88
- C4 -
3N4E
1
?
A:
[144-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
E
V
A
-
R
R
V
-
E
A
E
Q
-
P
A
A
V
K
I
R
W
D
G
D
R
----
T
R
C
D
V
D
I
-
P
G
D
I
A
K
A
R
A
V
R
E
L
L
G
PD
A
-----
V
I
G
F
---
D
A
N
N
G
Y
S
V
G
G
A
I
R
V
G
R
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
40.29
14%
-144
* C4 *
4CXF
4
CNRH_CUPMC
A:
[152-186]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
M
S
Q
P
E
A
A
A
V
L
G
L
S
V
K
A
V
E
-
G
R
------
I
-
G
R
A
R
A
K
L
S
A
L
-
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
40.14
26%
-135
- C4 -
1ETO
-
FIS_ECOLI
A:
[65-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
M
----
Q
Y
T
L
G
N
Q
T
R
A
A
L
M
M
G
I
N
R
G
T
L
R
-
K
K
------
L
-
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
40.01
29%
-138
- C4 -
1UMQ
-
A:
[49-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
----
E
M
C
D
R
N
V
S
E
T
A
R
R
L
N
M
H
R
R
T
L
Q
-
R
I
------
L
-
A
K
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------