@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31321: (2016-07-22 )
MFCTFFEKHHRKWDILLEKSTGVMEAMKVTSEEKEQLSTAIDRMNEGLDAFIQLYNESEIDEPLIQLDDDTAELMKQARDMYGQEKLNEKLNTIIKQILSISVSEEGEKE
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....-...30........40...-.....50....-....60....-------....70-........80....--------....90........100.......110-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
F
C
T
F
F
E
K
HHR
K
W
D
I
L
L
EKST
G
V
M
E
A
-
M
K
V
T
S
E
E
K
E
Q
L
S
T
A
I
D
R
M
-
N
E
G
L
D
A
F
I
Q
L
Y
-
N
E
S
EIDE
P
L
I-------QLDD
D
T
-
A
E
L
M
K
Q
A
R
D
MY
G
Q
E
--------
K
L
N
E
K
L
N
T
I
I
K
Q
I
L
S
I
SVSEEGEKE---------------------------
28
Fugue
78.86
100%
36
- C4 -
1YGM
-
MSTX_BACSU
A:
[3-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
T
F
F
E
K
H
H
R
K
W
D
I
L
L
E
K
S
T
G
V
M
E
A
-
M
K
V
T
S
E
E
K
E
Q
L
S
T
A
I
D
R
M
-
N
E
G
L
D
A
F
I
Q
L
Y
-
N
E
S
E
I
D
E
P
L
I
-------
Q
L
D
D
D
T
-
A
E
L
M
K
Q
A
R
D
M
Y
G
Q
E
--------
K
L
N
E
K
L
N
T
I
I
K
Q
I
L
S
I
S
V
S
E
E
G
E
K
E
LVPR-----------------------
7
HHSearch
78.13
100%
36
- C4 -
1YGM
-
MSTX_BACSU
A:
[3-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
T
F
F
E
K
H
H
R
K
W
D
I
L
L
E
K
S
T
G
V
M
E
A
-
M
K
V
T
S
E
E
K
E
Q
L
S
T
A
I
D
R
M
-
N
E
G
L
D
A
F
I
Q
L
Y
-
N
E
S
E
I
D
E
P
L
I
-------
Q
L
D
D
D
T
-
A
E
L
M
K
Q
A
R
D
M
Y
G
Q
E
--------
K
L
N
E
K
L
N
T
I
I
K
Q
I
L
S
I
S
V
S
E
E
G
E
K
E
---------------------------
1
PsiBlast_PDB
78.13
100%
36
- C4 -
1YGM
-
MSTX_BACSU
A:
[3-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
T
F
F
E
K
H
H
R
K
W
D
I
L
L
E
K
S
T
G
V
M
E
A
-
M
K
V
T
S
E
E
K
E
Q
L
S
T
A
I
D
R
M
-
N
E
G
L
D
A
F
I
Q
L
Y
-
N
E
S
E
I
D
E
P
L
I
-------
Q
L
D
D
D
T
-
A
E
L
M
K
Q
A
R
D
M
Y
G
Q
E
--------
K
L
N
E
K
L
N
T
I
I
K
Q
I
L
S
I
S
V
S
E
E
G
E
K
E
---------------------------
29
Fugue
56.95
17%
62
- C4 -
4WZ9
4
?
A:
[40-926]
QAVDERYRLPTT
S
I
P
I
H
YD
L
H
L
R
T
EIHRNER
T
F
T
G
T
V
G
I
Q
L
Q
V
VQATD
K
L
V
M
H
N
R
GLVMS
S
A
K
V
S
S
LPNGVT
G
A
P
T
L
IG
D
V
Q
Y
S
T
D
TTFE
H
I
T
F
T
S
P
T
I
L
Q
P
G
T
Y
L
L
E
V
A
F
Q
G
R
L
A
TNDDGF
Y
V
S
S
Y
V
A
DNG
E
R
R
Y
L
A
T
T
Q
F
ESTSARMAFPCYDEPGL
K
A
T
F
T
V
S
I
T
H
S
LS
Y
K
A
I
S
NMPQK
T
T
T
D
I
ET
D
M
R
T
T
F
F
E
K
T
P
A
M
S
TYL
L
A
F
V
V
SD
F
Q
L
R
L
S
GA
Q
R
V
Y
V
RPNAFNEA
T
F
A
L
E
A
G
V
K
I
L
K
V
L
D
D
H
L
GIPYDTYMP
K
L
D
Q
I
A
I
PDFAAGAMENWG
L
V
T
Y
REQALLFNPAVST
Y
R
G
K
T
N
V
A
T
T
I
A
H
E
Y
A
H
QWFGNLVSPEWWEY
I
W
L
N
E
G
F
A
T
L
Y
E
F
Y
A
L
D
M
A
Y
PGQEYWELFNQQV
I
Q
Y
A
M
G
Q
D
G
QASTRPM
N
W
N
A
A
T
P
G
E
I
S
A
L
FDRVAY
D
K
S
G
S
V
L
N
M
M
R
H
V
L
G
D
D
N
W
K
A
G
L
K
A
Y
L
T
D
R
AL
Q
G
A
V
D
E
Q
L
Y
A
G
L
Q
S
A
I
EGKGVLPNGVT
V
A
Q
I
M
R
T
W
T
N
E
A
G
Y
P
V
L
N
V
R
R
SYDT
G
D
V
I
I
S
Q
E
RFYND
R
K
V
P
N
TNIWM
I
P
Y
N
Y
V
H
QAKADFNEFDD
F
Q
W
L
ATK
A
A
R
I
E
T
TVPAN
E
W
I
V
F
NKQQVGY
Y
R
V
N
Y
D
E
H
N
W
E
L
I
T
N
A
L
H
E
NWASIH
R
L
N
R
A
Q
L
I
D
D
A
Y
W
L
A
R
S
GRLD
L
R
V
A
L
R
F
M
TYLRNERE
Y
A
P
W
T
A
A
N
V
A
L
T
Y
F
N
N
R
L
RGTAE
Y
H
N
F
L
I
F
V
D
A
L
IEDIYSLLTIDAVSPDDT
L
L
H
K
Y
L
V
Q
T
I
S
T
W
A
C
S
M
GY
T
D
C
L
M
K
T
A
A
L
L
K
A
E
A
S
GTGPAVHPDI
A
S
V
T
Y
C
Y
GMRSAL
E
S
E
F
Q
Y
L
Y
R
K
M
M
N
SKN
L
A
E
R
T
M
L
I
D
S
L
G
C
S
---
N
N
K
E
F
L
K
A
F
L
T
T
A
L
G
---
S
-
I
N
Y
R
A
D
E
R
R
R
V
V
Q
A
I
Y
S
G
G
R
T
G
V
D
A
L
I
E
F
L
M
D
P
A
L
V
N
E
F
V
S
-------
T
L
S
T
S
T
L
N
S
A
L
S
A
I
A
S
R
T
N
N
V
--------
E
E
M
N
K
L
N
A
L
I
T
A
L
-
G
S
R
V
N
S
Q
T
A
A
N
L
R
T
T
A
Q
A
N
L
D
W
V
N
G
F
E
G
L
M
L
S
N
F
L
AEA
16
HHSearch
45.59
17%
-153
- C4 -
2BA3
-
?
A:
[16-45]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
R
T
-
L
R
F
S
P
V
E
D
E
T
I
R
K
K
A
E
D
S
-
G
L
T
V
S
A
Y
I
------------------------------------------------------------------------------------------------------
10
HHSearch
45.48
24%
-89
- C4 -
2GPE
1
PUTA_ECOLI
A:
[6-38]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
-------
K
L
D
D
A
T
-
R
E
R
I
K
S
A
A
T
R
I
D
-
R
--------
T
P
H
W
L
I
K
Q
A
I
F
-----------------------------------------
21
HHSearch
44.60
15%
-98
- C4 -
1X93
-
?
A:
[35-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
L
Y
F
S
D
E
Q
Y
Q
K
L
E
K
M
A
N
E
E
-
E
E
S
V
G
S
Y
I
------------------------------------------------------------------------------------------------------
12
HHSearch
44.38
32%
-125
- C4 -
2MDV
-
?
A:
[5-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
W
L
S
D
Q
T
-
L
E
D
L
E
K
M
A
R
R
E
G
--------------------------------------------------------------
18
HHSearch
43.33
15%
-82
- C4 -
1MLD
-
MDHM_PIG
A:
[283-309]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
S
P
F
E
E
K
M
I
A
E
A
I
P
E
L
-
K
A
S
I
K
K
G
E
E
F
----------------------------------------------------------------------------------------------------
8
HHSearch
42.00
21%
-55
- C4 -
1PZG
-
?
A:
[297-329]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
E
-
L
E
L
N
E
E
E
K
K
Q
F
Q
K
S
V
D
D
V
-
M
A
L
N
K
A
V
A
A
L
Q
-
A
-------------------------------------------------------------------------------------------------
22
HHSearch
41.29
7%
-96
- C4 -
1B8P
-
MDH_AQUAR
A:
[299-326]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
L
S
I
D
A
F
S
Q
E
R
I
N
V
T
L
N
E
L
-
L
E
E
Q
N
G
V
Q
H
-----------------------------------------------------------------------------------------------------
37
Fugue
41.16
16%
87
- C4 -
3ZPJ
-
?
A:
[1-356]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
T
L
E
E
I
N
L
L
V
E
R
GY
Y
E
E
A
L
A
K
V
YEIED
P
I
E
Q
V
Q
V
L
T
K
I
V
V
T
I
Y
Q
H
DGPMEW
I
P
S
I
M
E
D
A
M
Y
I
A
K
K
LRD
P
A
N
K
A
V
A
Y
S
I
I
A
S
T
L
A
I
M
EY
E
E
D
A
M
D
F
F
N
R
A
I
D
E
A
N
E
IES
P
I
E
K
G
M
V
L
S
T
L
A
Y
H
L
A
I
A
GY
P
D
N
A
L
E
I
F
N
I
A
F
D
T
I
I
G
AETS
Y
T
H
K
V
D
G
I
L
R
I
G
D
L
L
E
K
A
G
D
T
LPSNEA
M
D
F
Y
K
M
A
F
D
I
F
D
K
L
HV
N
Q
R
A
A
I
V
E
K
K
I
E
L
A
K
T
V
YDVGL
P
Q
I
R
A
A
L
L
K
GK
N
H
Y
A
L
A
I
I
K
K
K
YSG
V
M
R
L
I
G
E
L
E
V
A
L
W
M
K
R
V
N
N
M
E
Y
L
D
V
V
D
K
A
F
E
C
C
E
S
-
P
R
F
T
D
V
N
V
Q
H
I
A
R
L
L
T
E
L
-
G
N
-
L
R
R
A
L
K
F
A
-
K
E
-------
I
-------
Q
N
I
H
K
R
-
S
E
A
L
K
A
I
A
L
E
L
V
R
R
--------
K
K
F
E
E
V
K
K
I
I
E
S
I
P
D
P
K
I
R
E
E
A
L
N
E
I
GTIE----------------------
20
HHSearch
40.56
9%
-118
- C4 -
4J3H
2
NUP54_RAT
A:
[9-41]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
D
A
D
L
L
R
E
I
K
Q
H
L
K
Q
Q
-
Q
E
G
L
S
H
L
M
S
I
I
-
K
D
D
L
E
---------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.44
35%
2
- C4 -
3ZIF
-
?
N:
[74-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
E
D
S
L
G
G
L
K
R
R
M
D
L
L
E
E
S
N
Q
Q
L
L
A
T
L
N
R
L
-
R
T
G
L
A
A
--------------------------------------------------------------------------------------------------------
14
HHSearch
40.32
12%
-123
- C4 -
2CPG
1
COPG_STRAG
A:
[6-39]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
-------
T
L
S
E
S
V
-
L
E
N
L
E
K
M
A
R
E
M
G
-
L
--------
S
K
S
A
M
I
S
V
A
L
E
N
Y
---------------------------------------
24
HHSearch
39.34
4%
-80
- C4 -
4TVO
3
MDH_MYCTU
A:
[298-325]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
L
E
I
D
E
F
S
R
G
R
I
D
K
S
T
A
E
L
-
A
D
E
R
S
A
V
T
E
-----------------------------------------------------------------------------------------------------
31
Fugue
38.80
26%
-19
- C1 -
2MFL
-
?
A:
[87-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
A
K
R
H
E
A
W
-
I
T
L
E
K
A
Y
E
--
D
A
-
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
-
L
N
G
I
R
A
F
L
P
----
G
S
L
V
D
V
R
P
V
-------
R
---
D
T
-
L
H
L
-
E
G
K
E
L
E
F
K
V
I
--------
K
L
D
Q
K
R
N
N
V
V
V
---
S
R
R
A
V
I
E
S
E
N
S
---------------------------
15
HHSearch
38.67
13%
-13
- C- -
4JNU
-
NUP54_HUMAN
A:
[453-484]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
D
A
D
L
L
R
E
I
K
Q
H
L
K
Q
Q
-
Q
E
G
L
S
H
L
I
S
I
I
-
K
D
D
L
----------------------------------------------------------------------------------------------
25
HHSearch
38.48
15%
-47
- C4 -
3T98
-
NUP54_RAT
A:
[457-490]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
D
A
D
L
L
R
E
I
K
Q
H
L
K
Q
Q
-
Q
E
G
L
S
H
L
I
S
I
I
-
K
D
D
L
E
D
--------------------------------------------------------------------------------------------
33
Fugue
37.87
16%
39
- C4 -
2KQ2
-
?
A:
[1-147]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDDRT
E
Y
D
V
Y
T
DGSYVNG
Q
Y
A
W
A
Y
A
F
V
K
D
G
K
V
H
Y
E
D
A
D
V
G
K
N
P
A
A
A
T
-
M
R
N
V
A
G
E
I
A
A
A
L
Y
A
V
K
K
A
-
S
Q
L
G
V
K
I
R
I
L
H
-
D
Y
A
G
I
A
F
W
A
T
GEWKAKN
E
F
T
Q
A
Y
-
A
K
L
M
N
Q
Y
R
G
I
Y
S
F
E
K
V
K
A
HSGN
E
F
N
D
Y
V
D
M
K
A
K
S
A
L
G
I
R
D
L
E
H
H
H
H
H
H--------------------------