@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0756: (2016-03-18 )
MTERALQVTNLHKKIRKREIIKGISFEVMPGEVFGFLGPNGAGKTTTIRMIVGLIKPTSGTILIGGKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYFARMDSSIKKERIQEVTELVGLEKRINDRVSTYSLGMRQRLGIAQALLSNPKLLILDEPTNGLDPSGIHEMRDFIRALARNEGISVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQVAHLLSSRAQLRWRVTPIEQAKAFLESVTEVEVDGEYLVTAMNEESAEWNEQLVAKGIKVHEIDKRKPSLEDLFLELTGGQSID

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4QC2)
?
[Raw transfer]



ATP_B_5(4QC2)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



GOL_A_5(4P33)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]
1 PsiBlast_PDB 93.3644%-108 - C1 -1VPL - ? -
73 HHSearch 92.0545%-113 - C1 -1VPL - ? -
4 PsiBlast_PDB 78.7329%-109 - C1 -3TUI - METN_ECOLI -
66 HHSearch 78.4028% -98 - C1 -2OLJ - ? -
34 PsiBlast_CBE 77.3732%-103 - C1 -4AYX - ABCBA_HUMAN -
5 PsiBlast_PDB 76.4429%-110 - C1 -3TUZ - METN_ECOLI -
75 Fugue 75.9524% -97 - C1 -3TUZ - METN_ECOLI -
60 HHSearch 75.8129% -91 - C1 -3RLF - MALK_ECOLI -
33 PsiBlast_CBE 75.5832%-105 - C1 -4AYW - ABCBA_HUMAN -
62 HHSearch 75.3531%-107 * C1 *3TUI - METN_ECOLI -
39 PsiBlast_CBE 74.5531% -89 - C1 -3FVQ - FBPC_NEIG1 -
38 PsiBlast_CBE 73.3331% -92 - C1 -3FVQ - FBPC_NEIG1 -
35 PsiBlast_CBE 73.2532% -98 - C1 -4AYT - ABCBA_HUMAN -
3 PsiBlast_PDB 72.4330%-102 - C1 -3DHW - METN_ECOLI -
63 HHSearch 71.9528% -86 - C1 -1OXX - ? -
23 PsiBlast_CBE 71.9033% -96 - C1 -4WBS - ? -
74 HHSearch 71.5226% -96 - C1 -1G6H - LIVG_METJA -
9 PsiBlast_PDB 71.5133%-100 - C1 -4WBS - ? -
70 HHSearch 71.3534% -99 - C1 -3ZDQ - ABCBA_HUMAN -
61 HHSearch 70.8731% -90 - C1 -2YYZ - ? -
14 PsiBlast_PDB 65.7831% -87 - C1 -4P32 5.9 LPTB_ECOLI
24 PsiBlast_CBE 65.1931% -90 - C1 -4P32 6.9 LPTB_ECOLI
26 PsiBlast_CBE 64.3731% -88 - C1 -4P33 2.6 LPTB_ECOLI
25 PsiBlast_CBE 62.9431% -83 - C1 -4QC2 6.9 ?
15 PsiBlast_PDB 62.2231% -83 - C1 -4QC2 6.8 ?
2 PsiBlast_PDB 52.5135% 2 - C1 -4YER 4.6 ?
17 PsiBlast_PDB 34.7931% -14 - C1 -4P31 6.3 LPTB_ECOLI