@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0847: (2016-03-19 )
MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEEIYLIGTDTTFAPFEFEKDGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSITDERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDKYDFDIVVFDDSAQMYDDVKTRNSVACFDDYPVLAYGVQTGNGLKIVTEKEKGNSYGFAVNKGKNQELLEKFNAGLVNIKASGEYEKILKNYLGKNAIKENTTEKGFMGIIKSSWPALLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTWTWLIIGIMYLIVITILTKISDRLERRLRND

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ARG_B_17(4H5G)
?
[Raw transfer]



ARG_A_21(4H5F)
?
[Raw transfer]



GLN_A_3(4G4P)
?
[Raw transfer]



ARG_A_2(3N26)
ARTJ_CHLPN
[Raw transfer]



MES_B_15(4KPT)
?
[Raw transfer]



ARG_B_4(3QAX)
ARTJ_CHLPN
[Raw transfer]



ARG_A_3(3QAX)
ARTJ_CHLPN
[Raw transfer]



MES_A_3(4KPT)
?
[Raw transfer]



GLN_B_2(1WDN)
GLNH_ECOLI
[Raw transfer]



GLN_B_2(1WDN)
GLNH_ECOLI
[Raw transfer]



PEG_A_3(4LA9)
?
[Raw transfer]



EDO_B_24(4H5F)
?
[Raw transfer]
1 PsiBlast_PDB 77.0258% -74 - C4 -4G4P 5.3 ?
23 PsiBlast_CBE 69.6440% -77 - C4 -4KPT 2.9 ?
22 PsiBlast_CBE 68.9840% -71 - C4 -4KR5 - ? -
5 PsiBlast_PDB 68.9840% -78 - C4 -4LA9 1.9 ?
3 PsiBlast_PDB 68.8040% -74 - C4 -4KR5 - ? -
4 PsiBlast_PDB 68.6540% -80 - C4 -4KPT 3.0 ?
2 PsiBlast_PDB 67.8246% -83 - C4 -4OEN - ? -
21 PsiBlast_CBE 67.5146% -79 - C4 -4OEN - ? -
34 PsiBlast_CBE 65.7335% -75 - C4 -4YMX - ? -
16 PsiBlast_PDB 65.6935% -77 - C4 -4YMX - ? -
11 PsiBlast_PDB 63.4438% -70 - C4 -1GGG - GLNH_ECOLI -
61 HHSearch 61.9834% -65 - C4 -2PVU - ? -
12 PsiBlast_PDB 61.9738% -65 - C4 -1WDN 4.0 GLNH_ECOLI
18 PsiBlast_PDB 61.8735% -64 - C4 -4PSH - ? -
75 Fugue 61.5119% -78 - C1 -4OPU - ? -
51 HHSearch 61.3628% -51 - C4 -1LST - ARGT_SALTY -
20 PsiBlast_PDB 61.0429% -58 - C4 -1HSL - HISJ_ECOLI -
35 PsiBlast_CBE 60.9935% -64 - C4 -4PSH - ? -
50 HHSearch 60.9736% -61 - C4 -1WDN 4.0 GLNH_ECOLI
68 Fugue 60.9435% -70 - C4 -1GGG - GLNH_ECOLI -
41 PsiBlast_CBE 40.2836% -36 - C4 -4H5F 2.8 ?
37 PsiBlast_CBE 40.2636% -40 - C4 -4H5G 5.1 ?
42 PsiBlast_CBE 38.6436% -40 - C4 -4H5F 5.1 ?
43 PsiBlast_CBE 37.0333% -51 - C4 -3N26 4.8 ARTJ_CHLPN
45 PsiBlast_CBE 36.7933% -53 - C4 -3QAX 4.2 ARTJ_CHLPN
44 PsiBlast_CBE 35.8433% -47 - C4 -3QAX 4.6 ARTJ_CHLPN