@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0997: (2016-03-20 )
MNCEKCNQNPATIQLYMNINGKRVEMPLCASCYAEVRNQANFGSNEFPGASGSPFDDIFRQLSGAANQANREQRSQANAQVQTQTAGGGNGILDEFGTNLTDMAKNEQLDPVIGRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGDVPSKLMNKEVILLDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSAEGSMDAGNILKPALARGDLQMIGATTLKEYRTIEKDAALERRFQPVTVSEPSTKETLTILNGLKPKYEDFHEVVYSPEALTAAVELSARYIQDRHLPDKAIDLMDEVGSKYNLSIEKLDENTVSERVARLEDEKNQALQMEDYEKAAKVRDEITRLEENKTSNSFSERPVIQASDIQAIIEEKTGIPVGRLQEDEQSKMKNLERNLTGKVIGQEDAVKKVAKAIRRSRVGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELFGTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVSFKDTVIIMTSNAGATDTEASVGFNTTTETKLEKGSDILAKLGAYFKPEFLNRLDSVIEFKSLEKDDLVQIIDLMLVDLNEMLAQEGVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDTIADSLIDQPEAKNLVATLNDNKEITITEQVTA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(4LJ9)

[Raw transfer]



ACP_A_2(4LJA)

[Raw transfer]



MNT_C_8(4LJ7)

[Raw transfer]



MNT_A_4(4LJ7)
CLPB_THET8
[Raw transfer]



ADP_A_2(4LJ5)

[Raw transfer]



MNT_B_6(4LJ7)
CLPB_THET8
[Raw transfer]



ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]



ADP_A_4(4FCW)
CLPB_THET8
[Raw transfer]



ADP_D_6(4FD2)

[Raw transfer]



ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]



ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]
141 Fugue 86.7244% -69 * C4 *1QVR - CLPB_THET8 -
116 HHSearch 82.4450% -75 - C6 -3PXI - CLPC_BACSU -
5 PsiBlast_PDB 81.0649% -78 - C6 -3PXI - CLPC_BACSU -
22 PsiBlast_CBE 63.3553% -94 - C3 -4LJ7 7.1 CLPB_THET8
6 PsiBlast_PDB 63.2253% -89 - C3 -4LJ4 - -
8 PsiBlast_PDB 62.8353% -88 - C3 -4LJ7 9.4 CLPB_THET8
7 PsiBlast_PDB 62.5253% -87 - C3 -4LJ5 6.6
10 PsiBlast_PDB 62.4053% -88 - C3 -4LJA 7.2
21 PsiBlast_CBE 62.3153% -94 - C3 -4LJ7 8.4
13 PsiBlast_PDB 62.2154% -94 - C3 -4FD2 6.5 CLPB_THET8
24 PsiBlast_CBE 62.0954% -95 - C3 -4FD2 6.2 CLPB_THET8
23 PsiBlast_CBE 61.4054% -94 - C3 -4FD2 6.0
14 PsiBlast_PDB 61.4052% -92 - C3 -4FCV 6.7 CLPB_THET8
15 PsiBlast_PDB 61.2652% -89 - C3 -4FCW 7.6 CLPB_THET8
9 PsiBlast_PDB 61.1653% -79 - C3 -4LJ9 6.7
12 PsiBlast_PDB 60.9454% -95 - C3 -4FCT - CLPB_THET8 -
11 PsiBlast_PDB 58.1459% -84 - C6 -4HSE - CLPB_THET8 -
4 PsiBlast_PDB 55.5752% 45 - C6 -3J3U - CLPC_BACSU -
1 PsiBlast_PDB 55.3153% 49 - C6 -3J3S - CLPC_BACSU -
2 PsiBlast_PDB 54.8053% 49 - C6 -3J3T - CLPC_BACSU -