@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1722: (2016-03-28 )
MTESNIPSFWAEKWQEHGYETPTEIQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKSTLEIVESAVRDRQLTLVSATKLENPDMFFAQTENTPVMLEVTAKPEELTNVEHLYMDVESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGIHGEIRKEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMGKSGTVITFANPREIRTLKQYLTIHNLKGKQVRFYQGKLLDGAVPENKIAKKASRPPKQVQKSKKDDGKKPFRKDKPTGAAGGRKEKPTNSAKPTRNKPNKFNKKPNNFKKS

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]



ADP_A_3(4D26)
?
[Raw transfer]



8OD_B_7(3NBF)
?
[Raw transfer]



ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]



ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]



ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]



ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]



ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]



AMP_A_2(2GXQ)
?
[Raw transfer]



8OP_C_10(3NBF)
?
[Raw transfer]



8OX_B_6(3MWL)
?
[Raw transfer]



ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]



AMP_B_9(2GXS)
?
[Raw transfer]



AMP_A_8(2GXS)
?
[Raw transfer]



8OD_A_5(3NBF)
?
[Raw transfer]



AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]



8OP_B_6(3MWK)
?
[Raw transfer]



AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]



AMP_A_3(4KBF)
?
[Raw transfer]



AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]



AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]



1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]
77 HHSearch 91.9531% -85 - C7 -2I4I - DDX3X_HUMAN -
18 PsiBlast_PDB 87.9931% -93 - C7 -2I4I 6.1 DDX3X_HUMAN
21 PsiBlast_CBE 87.7632% -92 - C7 -4KBG - ? -
23 PsiBlast_CBE 86.7832% -97 - C7 -4KBF - ? -
24 PsiBlast_CBE 86.1632% -87 - C7 -4KBF 5.4 ?
76 HHSearch 85.4530% -81 - C7 -1HV8 - H669_METJA -
1 PsiBlast_PDB 85.0931% -88 - C7 -1HV8 - H669_METJA -
70 HHSearch 85.0526% -82 - C7 -1S2M - DHH1_YEAST -
17 PsiBlast_PDB 84.9131% -75 - C7 -4PXA 5.0 DDX3X_HUMAN
16 PsiBlast_PDB 84.8630% -94 - C7 -1S2M - DHH1_YEAST -
13 PsiBlast_PDB 84.5230% -93 - C7 -4BRU - DHH1_YEAST -
73 HHSearch 84.5027% -91 - C7 -1XTI - DX39B_HUMAN -
14 PsiBlast_PDB 84.0330% -94 - C7 -4BRW 2.0 DHH1_YEAST
4 PsiBlast_PDB 83.7329% -96 - C7 -2J0S 7.9 IF4A3_HUMAN
7 PsiBlast_PDB 83.5929% -95 - C7 -3EX7 - IF4A3_HUMAN -
6 PsiBlast_PDB 83.4929% -96 - C7 -2HYI - IF4A3_HUMAN -
3 PsiBlast_PDB 83.1729% -91 - C7 -2J0Q - IF4A3_HUMAN -
2 PsiBlast_PDB 83.1029% -93 - C7 -2XB2 - IF4A3_HUMAN -
12 PsiBlast_PDB 82.6429% -77 - C7 -4D26 6.4 ?
11 PsiBlast_PDB 82.4329% -78 - C7 -4D25 - ? -
19 PsiBlast_PDB 80.7830% -96 - C7 -2VSO 5.2 IF4A_YEAST
20 PsiBlast_PDB 80.6730% -93 - C7 -2VSX 6.1 IF4A_YEAST
31 PsiBlast_CBE 63.0235% -97 - C7 -2GXS 5.1 ?
37 PsiBlast_CBE 62.8534% -94 - C7 -3NBF 4.3 ?
32 PsiBlast_CBE 62.8135% -96 - C7 -2GXS 5.2 ?
33 PsiBlast_CBE 62.6935% -97 - C7 -2GXQ 6.0 ?
36 PsiBlast_CBE 62.4434% -96 - C7 -3NBF 5.8 ?
38 PsiBlast_CBE 62.1534% -98 - C7 -3MWL 4.2 ?
35 PsiBlast_CBE 61.9434%-100 - C7 -3NBF 4.8 ?
40 PsiBlast_CBE 61.4534% -95 - C7 -3MWK 4.2 ?
47 PsiBlast_CBE 61.0432%-105 - C7 -2PL3 6.3 DDX10_HUMAN
44 PsiBlast_CBE 58.1232% -73 - C7 -3BER 4.8 DDX47_HUMAN
52 PsiBlast_CBE 53.4533% -97 - C7 -4PX9 5.6 DDX3X_HUMAN
50 PsiBlast_CBE 52.9733% -96 - C7 -4PX9 5.3 DDX3X_HUMAN
51 PsiBlast_CBE 52.9633% -97 - C7 -4PX9 5.5 DDX3X_HUMAN