@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1923: (2016-03-30 )
MKLITNKQGLVGAITVPGDKSMSHRSIMFGAIAEGKTVIRHFLRADDCLGTIKAFKALGVKIEETDEEIIVHGTGFDGLKQADGPLDIGNSGTTIRLMMGILAGRDFDTVILGDESIAKRPMNRVMLPLQQMGAKMHGKDGSEFAPITITGKQSLKRMEYHMPVASAQVKSAIIFAALQAEGETIIHEKEKTRDHTEHMIRQFGGEIEMDGLTIRVKGGQKFTGQEMTVPGDVSSAAFFIVAGLITPGSEIELTHVGLNPTRTGIFDVVKQMGGSLVVKDSSRSTGKLAGTVVVKTSKLKGTEIDGDIIPRLIDEIPVIALLATQAEGTTIIKDAAELKVKETNRIDAVATELNKMGADITPTEDGLIIHGKTPLHAANVTSYGDHRIGMMLQIAALLVEEGDVELERPEAVSVSYPTFFEDIRSLLK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GG9_A_2(2PQD)
AROA_AGRSC
[Raw transfer]




GG9_A_2(2PQB)
AROA_AGRSC
[Raw transfer]




RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]




RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]




S3P_A_4(2GG6)
AROA_AGRSC
[Raw transfer]




S3P_A_2(2GGA)
AROA_AGRSC
[Raw transfer]




S3P_A_2(4ZND)
AROA_COXBU
[Raw transfer]




S3P_A_2(2GGD)
AROA_AGRSC
[Raw transfer]




S3P_A_2(2QFQ)
AROA_ECOLI
[Raw transfer]




FMT_A_3(2QFQ)
AROA_ECOLI
[Raw transfer]




GPJ_A_3(2GGA)
AROA_AGRSC
[Raw transfer]




FMT_A_3(2QFS)
AROA_ECOLI
[Raw transfer]




GPJ_A_3(2GGD)
AROA_AGRSC
[Raw transfer]




S3P_A_3(2QFU)
AROA_ECOLI
[Raw transfer]




FMT_A_4(2QFS)
AROA_ECOLI
[Raw transfer]




29 PsiBlast_CBE 96.5756%-112 - C8 -3RMT - AROA1_BACHD -
2 PsiBlast_PDB 96.2656%-114 - C8 -1RF5 - AROA_STRPN -
23 PsiBlast_CBE 95.7156%-105 - C8 -1RF6 - AROA_STRPN -
4 PsiBlast_PDB 95.6756%-112 - C8 -3RMT - AROA1_BACHD -
3 PsiBlast_PDB 95.1856%-105 - C8 -1RF6 - AROA_STRPN -
44 HHSearch 95.0656%-111 - C8 -3RMT - AROA1_BACHD -
25 PsiBlast_CBE 95.0556%-105 - C8 -1RF4 - AROA_STRPN -
28 PsiBlast_CBE 95.0356%-107 - C8 -3RMT - AROA1_BACHD -
26 PsiBlast_CBE 95.0156%-104 - C8 -1RF4 - AROA_STRPN -
22 PsiBlast_CBE 94.8856%-103 - C8 -1RF6 - AROA_STRPN -
21 PsiBlast_CBE 94.8856%-103 - C8 -1RF6 - AROA_STRPN -
24 PsiBlast_CBE 94.7756%-106 - C8 -1RF4 - AROA_STRPN -
1 PsiBlast_PDB 94.6156%-105 - C8 -1RF4 - AROA_STRPN -
41 HHSearch 94.5856%-104 - C8 -1RF6 - AROA_STRPN -
27 PsiBlast_CBE 93.7156%-107 - C8 -3RMT - AROA1_BACHD -
5 PsiBlast_PDB 92.8952%-111 - C8 -4N3P - ? -
6 PsiBlast_PDB 91.6143%-110 - C8 -3ROI - AROA_COXBU -
31 PsiBlast_CBE 90.1243% -99 - C8 -4EGR - AROA_COXBU -
38 PsiBlast_CBE 90.0043%-108 - C8 -3ROI - AROA_COXBU -
30 PsiBlast_CBE 89.6343% -98 - C8 -4EGR - AROA_COXBU -
14 PsiBlast_PDB 87.0639% -90 - C8 -2PQC 6.9 AROA_AGRSC
17 PsiBlast_PDB 86.9739% -88 - C8 -2GGA 5.1 AROA_AGRSC
16 PsiBlast_PDB 86.5539% -88 - C8 -2GG6 4.5 AROA_AGRSC
9 PsiBlast_PDB 86.4543% -94 - C8 -4ZND 4.3 AROA_COXBU
42 HHSearch 86.4439% -92 - C8 -2PQC 6.9 AROA_AGRSC
11 PsiBlast_PDB 86.4239% -87 - C8 -2PQD 9.1 AROA_AGRSC
13 PsiBlast_PDB 85.9539% -87 - C8 -2PQB 9.5 AROA_AGRSC
12 PsiBlast_PDB 85.8639% -86 - C8 -2GGD 4.9 AROA_AGRSC
18 PsiBlast_PDB 71.3430% -72 - C8 -2QFQ 4.7 AROA_ECOLI
20 PsiBlast_PDB 71.2930% -72 - C8 -2QFS 3.2 AROA_ECOLI
19 PsiBlast_PDB 71.2330% -73 - C8 -2QFU 4.5 AROA_ECOLI