@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2716: (2016-04-06 )
MGKDLRNYKGIKKIMAILAVFTLVQGAAIIVMAITLARAITDLFHEHPFQSVTIQIGLFAGAYFLRHFLNVWKKQIVYRYAAKLAKTMREELLDSLFALGPRFARAEGTGKVVTMVMEGVADFRNYLELFLPKMMNMAIIPAMIWVYIAFQDWTSAFILMITLPILIVFMIILGLAAKKQADSQFETYRVLSNHFVDSLKGLETLKYLGLSHDHEGKIASVSSRYRKATMKTLRVAFMSSFALDFFTMLSIALVALFLGLGLIDGNMNLPIALSVLILAPEYFLPVREVGSDYHATLDGQEAGRVIQGIIDQAKAEKPEMDALPLTTFAENTEFSFENITVKHGADDADSLHKASFTVKGFEKIGIIGATGAGKSTLIDVLSGFLTPTSGEFHWNGKSGASLASTDWQTQVTYIPQHPYLFHDTIAGNIRFYHPNSTEDEMKKAAESAGLNKLVAGLEDGYETLVGEAGRMLSGGQEQRVALARAFLTDRPVVLMDEPTAHLDIETEYELKKPMLDLFEDRLVFFATHRLHWMLEMDRIIVLDHGAVVETGTHEELLSRKGFYYNLVKAQLEEV

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_D_5(3VX4)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]
18 PsiBlast_PDB 87.0323%-121 - C2 -4Q4A - Y288_THEMA -
17 PsiBlast_PDB 85.5923%-120 - C2 -3QF4 - Y288_THEMA -
19 PsiBlast_PDB 84.9923%-114 - C2 -4Q4H - Y288_THEMA -
20 PsiBlast_PDB 84.6723%-116 - C2 -4Q4J - Y288_THEMA -
98 HHSearch 81.6021%-102 - C2 -3WMG - ? -
1 PsiBlast_PDB 78.6424% -92 - C2 -2HYD - Y1866_STAAM -
97 HHSearch 78.2121% -96 - C2 -3ZDQ - ABCBA_HUMAN -
2 PsiBlast_PDB 77.9124% -92 - C2 -2ONJ - Y1866_STAAM -
95 HHSearch 77.0521% -93 - C2 -3B60 - MSBA_SALTY -
116 Fugue 76.4720% -93 - C2 -3B60 - MSBA_SALTY -
16 PsiBlast_PDB 76.4123% -93 - C2 -3B60 - MSBA_SALTY -
9 PsiBlast_PDB 76.2625% -92 - C2 -4S0F - ? -
7 PsiBlast_PDB 73.1025%-106 - C2 -4RY2 - ? -
119 Fugue 66.8521%-102 - C1 -4F4C - PGP1_CAEEL -
3 PsiBlast_PDB 65.5124% -92 - C2 -4A82 - Y1866_STAAM -
4 PsiBlast_PDB 64.5731% -88 - C2 -4MYC - ATM1_YEAST -
21 PsiBlast_CBE 63.0531% -87 - C2 -4MYH - ATM1_YEAST -
5 PsiBlast_PDB 62.2131% -87 - C2 -4MYH - ATM1_YEAST -
58 PsiBlast_CBE 57.5031% -89 - C2 -3WMG - ? -
105 HHSearch 55.9235% -93 - C2 -2FF7 - -
22 PsiBlast_CBE 55.2935% -92 - C2 -3VX4 6.1 ?
8 PsiBlast_PDB 54.0735% -94 - C2 -3VX4 6.3 ?
101 HHSearch 52.0932% -91 - C2 -3VX4 6.3 ?
61 PsiBlast_CBE 46.3135% -86 - C2 -4AYX 2.8 ABCBA_HUMAN
62 PsiBlast_CBE 40.9235% -80 - C2 -4AYT 3.3 ABCBA_HUMAN
68 PsiBlast_CBE 40.5034% -87 - C2 -4AYW 2.6 ABCBA_HUMAN
77 PsiBlast_CBE 36.5633% -66 - C2 -4YMV 3.7 ?
79 PsiBlast_CBE 36.3833% -71 - C2 -4YMU 4.5 ?
76 PsiBlast_CBE 35.7933% -66 - C2 -4YMV 4.2 ?
78 PsiBlast_CBE 35.6833% -67 - C2 -4YMU 4.5 ?
92 PsiBlast_CBE 28.8233% -58 - C2 -4U00 4.2 ?