@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2385: (2016-02-07 )
MGMRTVLTGLAGMLLGSMMPVQADMPRPTGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEKVALSGEQAFQVAEQRRQRFRLERGSNAIAVGSERSADGKGMLLANPHFPWNGAMRFYQMHLTIPGRLDVMGASLPGLPVVNIGFSRHLAWTHTVDTSSHFTLYRLALDPKDPRRYLVDGRSLPLEEKSVAIEVRGADGKLSRVEHKVYQSIYGPLVVWPGKLDWNRSEAYALRDANLENTRVLQQWYSINQASDVADLRRRVEALQGIPWVNTLAADEQGNALYMNQSVVPYLKPELIPACAIPQLVAEGLPALQGQDSRCAWSRDPAAAQAGITPAAQLPVLLRRDFVQNSNDSAWLTNPASPLQGFSPLVSQEKPIGPRARYALSRLQGKQPLEAKTLEEMVTANHVFSADQVLPDLLRLCRDNQGEKSLARACAALAQWDRGANLDSGSGFVYFQRFMQRFAELDGAWKEPFDAQRPLDTPQGIALDRPQVATQVRQALADAAAEVEKSGIPDGARWGDLQVSTRGQERIAIPGGDGHFGVYNAIQSVRKGDHLEVVGGTSYIQLVTFPEEGPKARGLLAFSQSSDPRSPHYRDQTELFSRQQWQTLPFSDRQIDADPQLQRLSIRE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B0S_C_3(4M1J)
?
[Raw transfer]



MYR_B_22(3SRA)
?
[Raw transfer]



MYR_B_10(3L94)
?
[Raw transfer]



3QK_C_3(4WKV)
?
[Raw transfer]



DAO_B_5(2WYB)
?
[Raw transfer]



OCA_B_8(3L91)
?
[Raw transfer]



3QJ_B_7(4WKU)
?
[Raw transfer]



GOL_C_7(4WKV)
PVDQ_PSEAE
[Raw transfer]



GOL_B_8(4WKU)
?
[Raw transfer]



GOL_A_4(4BTH)
?
[Raw transfer]



GOL_A_6(2WYE)
?
[Raw transfer]



GOL_A_16(4WKT)
PVDQ_PSEAE
[Raw transfer]



28S_B_13(3SRB)
?
[Raw transfer]



A08_B_13(4K2F)
?
[Raw transfer]



1OQ_B_17(4K2G)
?
[Raw transfer]



28N_B_20(3SRC)
?
[Raw transfer]



DAO_B_12(2WYD)
?
[Raw transfer]



BUB_C_3(4WKT)
?
[Raw transfer]



3QD_C_3(4WKS)
?
[Raw transfer]



B0S_C_3(4M1J)
PVDQ_PSEAE
[Raw transfer]
8 PsiBlast_PDB 98.11100% -79 - C3 -2WYD 3.2 ?
14 PsiBlast_PDB 98.07100% -80 - C3 -3SRC 5.0 ?
13 PsiBlast_PDB 98.06100% -80 - C3 -3SRB 5.1 ?
12 PsiBlast_PDB 97.97100% -80 - C3 -3SRA 4.8 ?
15 PsiBlast_PDB 97.96100% -80 - C3 -4K2F 6.8 ?
5 PsiBlast_PDB 97.93100% -80 - C3 -4WKV 4.2 ?
10 PsiBlast_PDB 97.92100% -80 - C3 -3L91 4.2 ?
2 PsiBlast_PDB 97.86100% -80 - C3 -4WKS 3.2 ?
16 PsiBlast_PDB 97.85100% -80 - C3 -4K2G 6.7 ?
11 PsiBlast_PDB 97.84100% -81 - C3 -3L94 5.1 ?
6 PsiBlast_PDB 97.76100% -80 - C3 -2WYB 4.4 ?
4 PsiBlast_PDB 97.76100% -80 - C3 -4WKU 3.2 ?
7 PsiBlast_PDB 97.69100% -80 - C3 -2WYC - ? -
1 PsiBlast_PDB 97.64100% -81 - C3 -4M1J 5.8 ?
3 PsiBlast_PDB 97.46100% -78 - C3 -4WKT 3.2 ?
9 PsiBlast_PDB 97.44100% -80 - C3 -2WYE 2.8 ?
17 PsiBlast_PDB 96.7299% -79 - C3 -4BTH 1.9 ?
20 PsiBlast_PDB 78.9625% -53 - C3 -1KEH - ? -
18 PsiBlast_PDB 78.2525% -57 * C3 *3S8R - ? -
19 PsiBlast_PDB 77.3725% -59 - C3 -4E56 - ? -
30 PsiBlast_CBE 51.94100% -52 - C3 -4WKV 3.0 PVDQ_PSEAE
32 PsiBlast_CBE 51.83100% -53 - C3 -4WKT 2.7 PVDQ_PSEAE
33 PsiBlast_CBE 51.38100% -52 - C3 -4M1J 2.8 PVDQ_PSEAE
31 PsiBlast_CBE 50.75100% -51 - C3 -4WKU 3.0 ?