@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00186_DYR_LA: (2014-08-30 )
MTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAQGAVVVHDVAAVFAYAKQHPDQELVIAGGAQIFTAFKDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA

Atome Classification :

(7 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTX_B_6(3IX9)
DYR_STRPN
[Raw transfer]



NAP_A_3(3JWF)
?
[Raw transfer]



NDP_A_3(3IX9)
DYR_STRPN
[Raw transfer]



NAP_A_3(3JWK)
?
[Raw transfer]



NAP_A_3(3JWC)
?
[Raw transfer]



NDP_B_2(3DFR)
DYR_LACCA
[Raw transfer]



5WB_A_4(3JWK)
?
[Raw transfer]



N22_A_5(3CSE)
?
[Raw transfer]



MTX_C_3(3DFR)
DYR_LACCA
[Raw transfer]



TOP_A_3(3TQ8)
?
[Raw transfer]



PEG_A_8(3SAI)
?
[Raw transfer]
2 PsiBlast_PDB 98.7798%-131 - C2 -3DFR 12.4 DYR_LACCA
5 PsiBlast_PDB 73.6639%-112 - C2 -3JWF 12.2 ?
20 PsiBlast_PDB 73.6138%-113 - C2 -3SAI 2.8 ?
6 PsiBlast_PDB 72.6539%-112 - C2 -3JWK 11.8 ?
4 PsiBlast_PDB 72.1739%-111 - C2 -3JWC 11.6 ?
47 HHSearch 70.9834%-120 * C2 *3IX9 11.6 DYR_STRPN
34 HHSearch 70.4731%-121 - C2 -3TQ8 4.9 ?