@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 121_tII_ORYSA: (2014-05-01 )
QSPPPPQCDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAACGIPLPNCG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
21 HHSearch 90.9457%-140 - C4 -1L6H - NLTPX_ORYSJ -
1 Fugue 90.5756%-140 - C4 -1L6H - NLTPX_ORYSJ -
11 SP3 89.0952%-140 - C4 -1L6H - NLTPX_ORYSJ -
22 HHSearch 87.1151%-139 - C4 -1N89 5.2 NLT2G_WHEAT
2 Fugue 74.7427%-135 - C4 -2RKN - DIRL1_ARATH -
23 HHSearch 73.5425%-123 - C4 -2RKN - DIRL1_ARATH -
29 HHSearch 72.1232%-119 * C4 *1T12 - NLTP1_TOBAC -
26 HHSearch 69.9432%-109 - C4 -2ALG - NLTP1_PRUPE -
27 HHSearch 67.1530%-122 - C4 -1SIY - NLTP1_VIGRR -
12 SP3 65.5324%-112 - C4 -1FK5 - NLTP_MAIZE -
28 HHSearch 64.9430%-125 - C4 -1AFH - NLTP_MAIZE -
24 HHSearch 63.4433% -98 - C4 -1BWO - NLTP1_WHEAT -
31 HHSearch 61.0725%-131 - C4 -1HYP - HPSE_SOYBN -
5 Fugue 57.8627%-103 - C4 -1BWO - NLTP1_WHEAT -
15 SP3 56.5920% -93 - C4 -1KNG - CYCY_BRADU -
3 Fugue 54.1614%-103 - C4 -1S6D - 2SS8_HELAN -
20 SP3 50.2412% -95 - C4 -1F9M - TRXF_SPIOL -
13 SP3 49.4914%-107 - C4 -1PS6 - PDXA_ECOLI -
14 SP3 47.6012%-101 - C4 -1U78 - TC3A_CAEEL -
9 Fugue 45.4714% -75 - C4 -1UFW - -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
42 50.51100% -35 - C- -M042 - -
39 40.50100% -38 - C- -M039 - -