@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-04 )
ALSCGQVDSKLAPCVAYVTGRASAISKECCSGVQGLNGLARSSPDRQTACRCLKSLATSIKAINMGKVSGVPGKCGVSVPFPISMSTDCNKVH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
22 HHSearch 93.5853%-117 - C2 -1T12 - NLTP1_TOBAC -
23 HHSearch 88.6250%-124 - C2 -2ALG 3.9 NLTP1_PRUPE
11 SP3 88.5050%-122 - C2 -1FK5 - NLTP_MAIZE -
21 HHSearch 85.3451%-116 - C2 -1AFH - NLTP_MAIZE -
26 HHSearch 84.8946%-121 - C2 -1BWO 4.8 NLTP1_WHEAT
25 HHSearch 79.6037%-119 - C2 -1SIY - NLTP1_VIGRR -
35 HHSearch 61.2019%-131 - C2 -1SM7 - ? -
34 HHSearch 60.1520%-155 - C2 -1BEA - ITRF_MAIZE -
10 Fugue 52.9719% -91 - C2 -1S6D - 2SS8_HELAN -
27 HHSearch 50.8824% -93 - C2 -2RKN - DIRL1_ARATH -
2 Fugue 48.1022% -61 - C2 -2RKN - DIRL1_ARATH -
32 HHSearch 46.5315%-116 - C2 -1B1U - IAAT_ELECO -
36 HHSearch 46.3316% -90 - C2 -3OB4 - ? -
37 HHSearch 46.0718% -97 - C2 -1PSY - 2SS_RICCO -
14 SP3 45.5716% -86 - C2 -1QPO - NADC_MYCTU -
20 SP3 44.6613% -90 - C2 -1QPO - NADC_MYCTU -
3 Fugue 44.0423% -76 - C2 -1L6H - NLTPX_ORYSJ -
28 HHSearch 42.9924% -78 - C2 -1L6H - NLTPX_ORYSJ -
9 Fugue 42.1911% -85 - C2 -1YOZ - Y941_ARCFU -
5 Fugue 41.4717% -28 - C2 -1PSY - 2SS_RICCO -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
42 90.79100%-130 - C- -M042 - -
44 90.60100%-133 - C- -M044 - -
40 88.48100%-128 - C- -M040 - -
45 45.37100% - - C- -M045 - -