@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-05 )
AVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIKF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
22 HHSearch 95.1655%-121 - C2 -1T12 - NLTP1_TOBAC -
21 HHSearch 91.2455%-117 - C2 -2ALG 3.8 NLTP1_PRUPE
24 HHSearch 90.6759%-110 - C2 -1SIY - NLTP1_VIGRR -
25 HHSearch 89.8448%-118 - C2 -1BWO 6.4 NLTP1_WHEAT
23 HHSearch 88.1455%-108 - C2 -1AFH - NLTP_MAIZE -
10 SP3 86.9554%-112 - C2 -1FK5 5.3 NLTP_MAIZE
32 HHSearch 55.1225%-116 - C2 -1BEA - ITRF_MAIZE -
37 HHSearch 54.9820%-135 - C2 -1HSS - IAA1_WHEAT -
6 Fugue 54.5322% -78 - C2 -1S6D - 2SS8_HELAN -
16 SP3 53.9915%-113 - C2 -1HSS - IAA1_WHEAT -
34 HHSearch 51.2025% -95 - C2 -1SM7 - ? -
26 HHSearch 48.6524% -88 - C2 -2RKN - DIRL1_ARATH -
31 HHSearch 45.4514%-109 - C2 -1B1U - IAAT_ELECO -
15 SP3 44.0417%-108 - C2 -1QPO - NADC_MYCTU -
2 Fugue 43.6824% -68 - C2 -2RKN - DIRL1_ARATH -
8 Fugue 43.1223% -62 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 42.5434% -68 - C2 -1L6H - NLTPX_ORYSJ -
3 Fugue 42.0829% -70 - C2 -1L6H - NLTPX_ORYSJ -
35 HHSearch 41.3425% -57 - C2 -1PSY - 2SS_RICCO -
33 HHSearch 40.3318% -75 - C2 -3OB4 - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
39 96.41100%-125 - C- -M039 - -
45 94.26100%-117 - C- -M045 - -
38 93.50100%-121 - C- -M038 - -
42 91.73100%-124 - C- -M042 - -