@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 686_tII_BRADI: (2014-05-13 )
AAATTCNAGQLAACAAAVMTGAKPSAACCSNLRAQQRCFCNYAKNPVYGRYIKSPYVRQTVATCGIVLPRC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
15 Fugue 95.7360%-140 - C2 -1L6H - NLTPX_ORYSJ -
2 HHSearch 95.4460%-140 - C2 -1L6H - NLTPX_ORYSJ -
25 SP3 94.6657%-140 - C2 -1L6H - NLTPX_ORYSJ -
1 HHSearch 92.7660%-134 - C2 -1N89 6.7 NLT2G_WHEAT
16 Fugue 73.8228%-123 - C2 -2RKN - DIRL1_ARATH -
9 HHSearch 71.2832%-117 - C2 -1T12 - NLTP1_TOBAC -
3 HHSearch 69.5226%-118 - C2 -2RKN - DIRL1_ARATH -
26 SP3 67.3223% -89 * C2 *1FK5 - NLTP_MAIZE -
7 HHSearch 62.8327% -99 - C2 -1AFH - NLTP_MAIZE -
5 HHSearch 60.1828%-102 - C2 -2ALG - NLTP1_PRUPE -
8 HHSearch 58.8323% -92 - C2 -1SIY - NLTP1_VIGRR -
18 Fugue 57.4615%-134 - C2 -1S6D - 2SS8_HELAN -
28 SP3 57.2816%-104 - C2 -1PS6 - PDXA_ECOLI -
10 HHSearch 55.0920%-105 - C2 -1HYP - HPSE_SOYBN -
4 HHSearch 51.9325% -56 - C2 -1BWO - NLTP1_WHEAT -
33 SP3 50.2816% -85 - C2 -1EZM - ? -
20 Fugue 48.7019% -83 - C2 -1GD8 - RL17_THET8 -
27 SP3 45.6211% -81 - C2 -1U78 - TC3A_CAEEL -
21 Fugue 43.8712% -72 - C2 -1IGN - RAP1_YEAST -
30 SP3 43.1814% -87 - C2 -1KNG - CYCY_BRADU -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
39 97.56100%-137 - C- -M039 - -
40 94.07100%-136 - C- -M040 - -
35 56.67100% -49 - C- -M035 - -