@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0252: (2015-11-29 )
MRSISCSKEYAEDVRNLNIRPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQIISKELRVSFRATSGPLLNKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDLLVGEGPSTRTLRIDLPPFTLVGATTRLGLLSAPLRDRFGIPLRLEFYSFEELVDIIKRGTKVFSAEIEEDAIQEIACRARGTPRIALRLLRRIRDFVEVKDNKKITHKIADSALSKLGIDKMGLNKLDVDYLRFLFNTSGSVGIDTISIALSEDSGNIEETVEPYLVKISFVKRTPRGRVLTDQGKEYLSLQY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_4(1IN7)
RUVB_THEMA
[Raw transfer]




ADP_A_2(1IN8)
RUVB_THEMA
[Raw transfer]




ADP_A_5(1IN4)
RUVB_THEMA
[Raw transfer]




ADP_A_2(1IN5)
RUVB_THEMA
[Raw transfer]




ADP_A_4(1IN6)
RUVB_THEMA
[Raw transfer]




ADP_A_5(1IN4)
RUVB_THEMA
[Raw transfer]




ADP_A_3(3PFI)
?
[Raw transfer]




ADP_A_3(3PFI)
?
[Raw transfer]




ATP_A_5(1J7K)
RUVB_THEMA
[Raw transfer]




ANP_C_3(1IXS)
RUVB_THET8
[Raw transfer]




ANP_M_13(1IXR)
RUVB_THET8
[Raw transfer]




ADE_B_6(1HQC)
RUVB_THET8
[Raw transfer]




ADE_A_5(1HQC)
RUVB_THET8
[Raw transfer]




ADE_A_5(1HQC)
RUVB_THET8
[Raw transfer]




ADE_A_5(1HQC)
RUVB_THET8
[Raw transfer]




115 HHSearch 95.3049%-113 * C2 *1IN4 9.4 RUVB_THEMA
4 PsiBlast_PDB 95.2550%-112 - C2 -1IN6 8.9 RUVB_THEMA
7 PsiBlast_PDB 95.0450%-113 - C2 -1J7K 8.7 RUVB_THEMA
5 PsiBlast_PDB 94.9850%-112 - C2 -1IN8 9.4 RUVB_THEMA
2 PsiBlast_PDB 94.4550%-112 - C2 -1IN4 9.4 RUVB_THEMA
113 HHSearch 93.8149%-115 - C2 -3PFI 8.0 ?
3 PsiBlast_PDB 93.6850%-109 - C2 -1IN5 8.5 RUVB_THEMA
9 PsiBlast_PDB 93.6651%-108 - C2 -1IXS 5.0 RUVB_THET8
1 PsiBlast_PDB 93.6048%-116 - C2 -3PFI 8.0 ?
6 PsiBlast_PDB 93.3050%-115 - C2 -1IN7 9.3 RUVB_THEMA
103 Fugue 91.7151%-109 - C2 -1HQC 3.9 RUVB_THET8
114 HHSearch 90.7351%-109 - C2 -1HQC 3.9 RUVB_THET8
10 PsiBlast_PDB 88.8751%-108 - C2 -1HQC 3.9 RUVB_THET8
21 PsiBlast_CBE 87.0251%-107 - C2 -1HQC 4.0 RUVB_THET8
8 PsiBlast_PDB 81.0751% -95 - C2 -1IXR 5.1 RUVB_THET8
117 HHSearch 61.0322% -99 - C2 -1NJG - DPO3X_ECOLI -
122 HHSearch 60.9426%-101 - C2 -3PVS - RARA_ECOLI -
132 HHSearch 58.3122%-102 - C2 -1JR3 - DPO3X_ECOLI -
121 HHSearch 56.9420% -94 - C2 -3D8B - FIGL1_HUMAN -
119 HHSearch 56.4116%-104 - C2 -2QBY - CDC61_SULSO -