@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0586: (2015-12-02 )
MLKIAIVGLPNAGKSTLFNRILGRKAAVVSNIPGITRDRQEGVGRISDLELKIIDTGGWNDQTNFFLQIVEQIEFSLFSADIIFFLVDAKVQNEQNKEFAKWLKRRTNKSVILIANKCESYKSENIDYLQFFDFIGPVYISAEHNLGMVDLYNALAGVIDSSTNFSSVIPKPLPVIKVAGTGIQEKNEQISTLHAENQSNQPNRLRVAIIGRPNVGKSTFLNSLLSENRLITSSEPGTTRDSVDITYNHNGKLITLIDTAGIRRRANLIDNLELKFVKKSMESIKRSHVVVLMLDSLLGIKQQDLSIGEAAIKGGKGIIIVLNKWDLINKDDRSRLIKFVRQQEITRLFLEVPTVTISALKGIRCSDVIDKCLEVNEFLNKKISTAKVNKWLVDALGRHPHPFVKGRAIRMKYIAQIGTKPPAFSLTCNVPEGVDESYKRYLTNDLRKNFFIDGIPVRLLLKKNKNPYVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]




GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]




GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]




GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]




GDP_A_3(2HJG)
DER_BACSU
[Raw transfer]




GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




1 PsiBlast_PDB 91.4233%-109 - C5 -4DCS 6.5 DER_BACSU
3 PsiBlast_PDB 91.3933%-112 - C5 -4DCV 6.9 DER_BACSU
2 PsiBlast_PDB 90.8933%-111 - C5 -4DCU 6.3 DER_BACSU
4 PsiBlast_PDB 89.7933%-109 - C5 -2HJG 6.4 DER_BACSU
5 PsiBlast_PDB 86.1929% -99 - C5 -1MKY 7.6 DER_THEMA
95 HHSearch 81.6430% -94 - C5 -1MKY 7.4 DER_THEMA
84 Fugue 77.1228% -77 - C5 -1MKY - DER_THEMA -
22 PsiBlast_CBE 60.6139%-115 - C5 -4KYU - DER_BACSU -
7 PsiBlast_PDB 58.5039%-106 - C5 -4KYU - DER_BACSU -
13 PsiBlast_PDB 57.5933%-118 * C7 *3R9W - ERA_AQUAE -
104 HHSearch 57.3828%-126 - C5 -1MKY - DER_THEMA -
15 PsiBlast_PDB 56.7033%-115 - C7 -3IEV - ERA_AQUAE -
106 HHSearch 56.5427%-123 - C5 -3GEH - MNME_NOSS1 -
14 PsiBlast_PDB 56.4233%-111 - C7 -3R9X - ERA_AQUAE -
96 HHSearch 56.3626% -79 - C5 -3IEV 10.5 ERA_AQUAE
21 PsiBlast_CBE 54.2337% -88 - C5 -2DYK - ? -
6 PsiBlast_PDB 54.1137% -86 - C5 -2DYK - ? -
100 HHSearch 53.9036% -89 * C5 *2DYK - ? -
99 HHSearch 53.4430%-101 - C5 -3IEV - ERA_AQUAE -
9 PsiBlast_PDB 52.8137%-103 - C6 -1XZQ - ? -