@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0029: (2016-03-11 )
MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVKKDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDNDRLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSLIYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_B_2(4LVL)
PRE_STRAG
[Raw transfer]
-
CHAIN_C_3(4LVI)
PRE_STRAG
[Raw transfer]
-
CHAIN_F_6(4LVM)
PRE_STRAG
[Raw transfer]
-
CHAIN_C_3(4LVI)
PRE_STRAG
[Raw transfer]
-
CHAIN_C_3(4LVK)
PRE_STRAG
[Raw transfer]
-
NACID_C_3(4LVL)
PRE_STRAG
[Raw transfer]
-
CHAIN_E_3(4LVM)
PRE_STRAG
[Raw transfer]
-
13 PsiBlast_CBE 91.3446% -46 - C4 -4LVM 21.2 PRE_STRAG
3 PsiBlast_PDB 91.0146% -41 - C4 -4LVL 25.3 PRE_STRAG
37 Fugue 90.3747% -40 - C4 -4LVI 25.9 PRE_STRAG
2 PsiBlast_PDB 89.3746% -43 - C4 -4LVK 24.6 PRE_STRAG
1 PsiBlast_PDB 89.2246% -41 - C4 -4LVI 25.9 PRE_STRAG
4 PsiBlast_PDB 88.9846% -54 - C4 -4LVM 23.6 PRE_STRAG
42 Fugue 64.0419% 68 - C1 -4IC4 - -
43 Fugue 61.5218% 13 - C3 -4P5W - CMC2_HUMAN -
40 Fugue 59.0613% 49 - C5 -4O5J - ? -
46 Fugue 54.2514% 39 - C5 -3EDV - SPTB2_HUMAN -
27 HHSearch 50.3217% -49 - C4 -1OMH - ? -
18 HHSearch 48.6618% 34 - C4 -3NRD - ? -
20 HHSearch 48.3822% 10 - C4 -2OIK - ? -
36 HHSearch 48.2920% -37 - C- -3L6T - ? -
35 HHSearch 48.1020% 28 - C4 -3P0T - ? -
22 HHSearch 45.9914% 15 - C4 -3I24 - ? -
17 HHSearch 45.5716% -1 - C4 -2NS6 - MOBA2_ECOLX -
26 HHSearch 45.5412% 37 * C4 *3LB5 - ? -
45 Fugue 45.0616% 83 * C5 *1QOY - HLYE_ECOLI -
34 HHSearch 44.7718% 16 - C4 -1FIT - FHIT_HUMAN -