@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0884: (2016-03-19 )
MKFISNNNITDPTLNLAMEEYVLKNLPAEESYFLFYINRPSIIVGKNQNTIEEVNQTYIDAHNIDVVRRISGGGAVYHDTGNLNFSFITDDDGNSFHNFQKFTEPIVQALQSLGVNAELTGRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNSDLDEVQNALKVNPAKIKSKGIKSVRKRVANIQEFLNDPLEIEEFKKIILKTIFGETEVEEYKLTDEDWENIEKLSNDKYRTWAWNYGRNPKYNFEREEKFEKGFVQIKFDVKRGKIEHAKIFGDFFGVGDVTDLENALVGCLHDFEHIEEALSEYDLYHYFGDIDRHELIRLMS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAQ_A_5(2E5A)
LIPT_BOVIN
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



LAQ_A_2(3A7R)
LPLA_ECOLI
[Raw transfer]



ATP_A_3(2ARU)
LPLAN_THEAC
[Raw transfer]



AMP_A_6(3A7A)
LPLA_ECOLI
[Raw transfer]



AMP_C_8(3A7A)
LPLA_ECOLI
[Raw transfer]



AMP_A_4(2ART)
LPLAN_THEAC
[Raw transfer]



LPA_A_5(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_A_5(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_C_7(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_D_8(2C8M)
LPLAN_THEAC
[Raw transfer]



LPA_B_6(2C8M)
LPLAN_THEAC
[Raw transfer]



MPD_A_4(3R07)
LPLAN_THEAC
[Raw transfer]



EDO_A_11(1VQZ)
?
[Raw transfer]



37R_B_6(4TVY)
LPLA_ECOLI
[Raw transfer]



EDO_A_12(1VQZ)
?
[Raw transfer]



37R_B_5(4TVY)
LPLA_ECOLI
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]



EDO_A_16(1VQZ)
?
[Raw transfer]
29 HHSearch 98.3743% -85 - C4 -1VQZ 3.0 ?
1 PsiBlast_PDB 97.1043% -78 - C4 -1VQZ 3.0 ?
30 HHSearch 89.6232% -70 * C4 *3A7R 10.1 LPLA_ECOLI
3 PsiBlast_PDB 86.1533% -66 - C4 -3A7R 10.1 LPLA_ECOLI
6 PsiBlast_PDB 85.3532% -63 - C4 -4TVW - LPLA_ECOLI -
23 PsiBlast_CBE 84.9432% -65 - C4 -4TVW - LPLA_ECOLI -
25 PsiBlast_CBE 84.7332% -67 - C4 -4TVW - LPLA_ECOLI -
2 PsiBlast_PDB 84.3633% -66 - C4 -3A7A 6.3 LPLA_ECOLI
21 PsiBlast_CBE 84.3433% -62 - C4 -3A7A 5.4 LPLA_ECOLI
24 PsiBlast_CBE 84.2732% -66 - C4 -4TVW - LPLA_ECOLI -
22 PsiBlast_CBE 82.4532% -76 - C4 -4TVY 3.4 LPLA_ECOLI
5 PsiBlast_PDB 81.0533% -69 - C4 -1X2H - LPLA_ECOLI -
31 HHSearch 78.4224% -72 - C4 -2E5A 10.6 LIPT_BOVIN
13 PsiBlast_PDB 76.6029% -68 - C4 -3A7U - LIPT_BOVIN -
8 PsiBlast_PDB 76.1431% -83 - C4 -2ART 5.0 LPLAN_THEAC
10 PsiBlast_PDB 75.8031% -79 - C4 -2C7I - LPLAN_THEAC -
28 PsiBlast_CBE 75.7231% -83 - C4 -2C8M 3.5 LPLAN_THEAC
26 PsiBlast_CBE 75.5931% -79 - C4 -2C8M 3.6 LPLAN_THEAC
9 PsiBlast_PDB 75.3331% -78 - C4 -2ARU 6.8 LPLAN_THEAC
27 PsiBlast_CBE 74.9031% -79 - C4 -2C8M 3.6 LPLAN_THEAC
7 PsiBlast_PDB 74.7731% -77 - C4 -3R07 3.0 LPLAN_THEAC
11 PsiBlast_PDB 74.1931% -84 - C4 -2C8M 3.8 LPLAN_THEAC
32 HHSearch 73.5530% -76 - C4 -2C8M 3.8 LPLAN_THEAC