@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0959: (2016-03-20 )
MTNKREDVRNIAIIAHVDHGKTTLVDELLKQSGIFRENEHVDERAMDSNDIERERGITILAKNTAVDYKGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLKPVVVVNKIDKPSARPEGVVDEVLDLFIELEANDEQLEFPVVYASAVNGTASLDPEKQDDNLQSLYETIIDYVPAPIDNSDEPLQFQVALLDYNDYVGRIGIGRVFRGKMRVGDNVSLIKLDGTVKNFRVTKIFGYFGLKRLEIEEAQAGDLIAVSGMEDINVGETVTPHDHQEALPVLRIDEPTLEMTFKVNNSPFAGREGDFVTARQIQERLNQQLETDVSLKVSNTDSPDTWVVAGRGELHLSILIENMRREGYELQVSKPQVIIKEIDGVMCEPFERVQCEVPQENAGAVIESLGARKGEMVDMTTTDNGLTRLIFNVPARGMIGYTTEFMSMTRGYGIINHTFEEFRPRIKAQIGGRRNGALISMDQGSASTYAILGLEDRGVNFMEPGTEVYEGMIVGEHNRENDLTVNITKTKHQTNVRSATKDQTQTMNRPRILTLEEALQFINDDELVEVTPESIRLRKKILNKNVREKEAKRIKQMMQENE

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]



GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]



GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]



GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]



GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]



GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]



GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]



GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_A_5(4ZCL)
?
[Raw transfer]



GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]



G4P_A_5(4ZCM)
?
[Raw transfer]



GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]



GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]



GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]



GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]



GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]



GDP_A_3(4M1K)
?
[Raw transfer]



GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]



GDP_B_9(4ZCL)
?
[Raw transfer]



GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]



GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]



GDP_A_2(2BM0)
?
[Raw transfer]



GDP_A_2(3WYA)
EF1A_PYRHO
[Raw transfer]



GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]



G4P_B_9(4ZCM)
?
[Raw transfer]



GNP_A_2(2BV3)
EFG_THETH
[Raw transfer]



GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]



GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]



GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]
1 PsiBlast_PDB 91.1054% -78 - C3 -4ZCI - ? -
22 PsiBlast_CBE 90.3154% -77 - C3 -4ZCI - ? -
3 PsiBlast_PDB 89.5454% -77 - C3 -4ZCM 4.6 ?
23 PsiBlast_CBE 89.1254% -78 - C3 -4ZCM 4.3 ?
21 PsiBlast_CBE 89.1154% -78 - C3 -4ZCL 5.2 ?
2 PsiBlast_PDB 88.6854% -79 - C3 -4ZCL 5.5 ?
4 PsiBlast_PDB 83.5754% -68 - C2 -5A9W - ? -
5 PsiBlast_PDB 82.9354% -67 - C2 -5A9X - ? -
95 HHSearch 74.6930% -72 - C4 -2XEX - EFG_STAAU -
98 HHSearch 70.3926% -66 - C4 -2DY1 - ? -
100 HHSearch 69.1822% -60 - C4 -3JB9 - ? -
7 PsiBlast_PDB 66.9028% -71 - C3 -3DEG - LEPA_ECOLI -
8 PsiBlast_PDB 64.4028% -77 - C3 -3CB4 - LEPA_ECOLI -
122 Fugue 63.8427% -66 - C5 -3CB4 - LEPA_ECOLI -
123 Fugue 58.5028% -34 - C5 -4M1K - ? -
102 HHSearch 58.2822% -70 - C4 -2H5E - RF3_ECOLI -
103 HHSearch 57.2924% -60 * C4 *3VQT - RF3_DESVM -
116 HHSearch 56.8122% -74 - C4 -3P26 - HBS1_YEAST -
114 HHSearch 56.1926% -60 - C4 -1KK1 - IF2G_PYRAB -
101 HHSearch 55.6322% -47 - C4 -3TR5 - RF3_COXBU -
43 PsiBlast_CBE 54.8231% -63 - C3 -1HA3 7.5 EFTU1_THET8
35 PsiBlast_CBE 53.7931% -56 * C3 *4H9G 8.2 EFTU1_THETH
37 PsiBlast_CBE 53.6531% -55 - C3 -4LC0 7.9 EFTU1_THETH
45 PsiBlast_CBE 53.5631% -53 - C3 -1EXM 8.2 EFTU1_THETH
38 PsiBlast_CBE 53.5131% -54 - C3 -4LBZ 8.3 EFTU1_THETH
39 PsiBlast_CBE 53.5031% -53 - C3 -4LBY 8.2 EFTU1_THETH
41 PsiBlast_CBE 53.3431% -54 - C3 -4LBV 8.1 EFTU1_THETH
42 PsiBlast_CBE 53.1831% -59 - C3 -2C77 8.6 EFTU2_THET8
106 HHSearch 52.8930% -65 - C3 -2C78 7.4 EFTU1_THET8
40 PsiBlast_CBE 52.3531% -55 - C3 -4LBW 8.2 EFTU1_THETH
36 PsiBlast_CBE 51.2531% -52 - C3 -2C78 8.5 EFTU1_THET8
44 PsiBlast_CBE 50.0031% -53 - C3 -1HA3 7.8 EFTU1_THET8
56 PsiBlast_CBE 49.8931% -49 - C3 -1EFT 7.8 EFTU_THEAQ
55 PsiBlast_CBE 48.1931% -47 - C3 -1B23 7.8 EFTU_THEAQ
64 PsiBlast_CBE 46.6943% -73 - C3 -2BM0 5.6 ?
67 PsiBlast_CBE 45.6343% -67 - C3 -2J7K 6.1 EFG_THETH
63 PsiBlast_CBE 45.5644% -67 - C3 -2BM1 6.2 EFG_THETH
68 PsiBlast_CBE 45.5043% -66 - C3 -2BV3 4.7 EFG_THETH
46 PsiBlast_CBE 44.8331% -42 - C3 -1TUI 5.3 EFTU_THEAQ
48 PsiBlast_CBE 44.4531% -42 - C3 -1TUI 7.2 EFTU_THEAQ
47 PsiBlast_CBE 44.1831% -39 - C3 -1TUI 5.5 EFTU_THEAQ
62 PsiBlast_CBE 44.1144% -67 - C3 -2EFG 5.9 EFG_THET8
61 PsiBlast_CBE 43.9644% -69 - C3 -4M1K 5.3 ?
60 PsiBlast_CBE 43.5844% -70 - C3 -4MYT 4.5 EFG_THETH
59 PsiBlast_CBE 43.2044% -66 - C3 -4MYU 5.1 EFG_THETH
57 PsiBlast_CBE 43.0944% -67 - C3 -1FNM 6.2 EFG_THETH
81 PsiBlast_CBE 42.7933% -73 - C3 -3WYA 6.3 EF1A_PYRHO
78 PsiBlast_CBE 40.7933% -54 - C3 -4IW3 6.2 EFTU1_PSEPK
79 PsiBlast_CBE 40.4233% -55 - C3 -4IW3 6.7 EFTU1_PSEPK
69 PsiBlast_CBE 32.4340% -31 - C3 -3J25 2.0 TET1_ENTFL