@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1227: (2016-03-23 )
MTHLFEGVGVALTTPFTNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKERILKTVIDLVDKRVPVIAGTGTNDTEKSIQASFQAKALGADAIMLITPYYNKTNQRGLVKHFEAITDAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTLLSALSVDINPIPIKALTSYLEFGNYELRLPLVSLEDTDTKVLREAYDTFKAGENE

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_11(3VFL)
?
[Raw transfer]




GOL_A_6(3VFL)
?
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




GOL_A_3(3TAK)
?
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_7(3PUE)
?
[Raw transfer]




GOL_B_7(3PUL)
?
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




LYS_A_3(4PFM)
?
[Raw transfer]




LYS_B_7(4PFM)
?
[Raw transfer]




MES_A_8(3VFL)
?
[Raw transfer]




MES_B_12(3VFL)
?
[Raw transfer]




24 PsiBlast_CBE 98.7798%-108 - C3 -3DAQ - DAPA_STAAR -
1 PsiBlast_PDB 98.6697%-112 - C3 -3DI0 - DAPA_STAAC -
116 HHSearch 98.4799%-109 - C3 -3DAQ Error DAPA_STAAR
3 PsiBlast_PDB 98.2598%-108 - C3 -3DAQ - DAPA_STAAR -
25 PsiBlast_CBE 97.9898%-108 - C3 -3DAQ - DAPA_STAAR -
22 PsiBlast_CBE 97.8897%-110 - C3 -3DI0 - DAPA_STAAC -
21 PsiBlast_CBE 97.5097%-107 - C3 -3DI1 - DAPA_STAAC -
23 PsiBlast_CBE 97.4398%-108 - C3 -3DAQ - DAPA_STAAR -
2 PsiBlast_PDB 96.9197%-111 - C3 -3DI1 - DAPA_STAAC -
102 Fugue 72.8334% -95 - C3 -1DHP - DAPA_ECOLI -
37 PsiBlast_CBE 71.8736% -99 - C3 -2EHH - DAPA_AQUAE -
35 PsiBlast_CBE 71.5536% -98 - C3 -2EHH - DAPA_AQUAE -
41 PsiBlast_CBE 71.2137% -91 - C3 -1XKY - ? -
9 PsiBlast_PDB 71.2136% -97 - C3 -2EHH - DAPA_AQUAE -
131 HHSearch 71.1540% -98 - C3 -2YXG - DAPA_METJA -
36 PsiBlast_CBE 71.1336% -97 - C3 -2EHH - DAPA_AQUAE -
113 HHSearch 70.8540% -93 * C3 *3QZE - DAPA_PSEAE -
27 PsiBlast_CBE 70.6939% -96 - C3 -3PB2 - DAPA_THEMA -
31 PsiBlast_CBE 70.3938% -98 - C3 -3PB0 - DAPA_THEMA -
7 PsiBlast_PDB 70.2438% -98 - C3 -3PB0 - DAPA_THEMA -
123 HHSearch 69.6734% -90 - C3 -3SI9 2.2 DAPA_BARHE
68 PsiBlast_CBE 69.2335% -94 - C3 -3G0S 2.1 DAPA_SALTY
67 PsiBlast_CBE 69.1035% -94 - C3 -3G0S 2.4 DAPA_SALTY
114 HHSearch 67.8234% -86 - C3 -3FLU 2.1 DAPA_NEIMB
119 HHSearch 67.2635% -94 - C3 -3TAK 2.6 ?
72 PsiBlast_CBE 66.7935% -89 - C3 -1YXD 2.7 DAPA_ECOLI
69 PsiBlast_CBE 66.7535% -89 - C3 -2ATS 3.2 DAPA_ECOLI
71 PsiBlast_CBE 66.6535% -89 - C3 -1YXD 3.8 DAPA_ECOLI
79 PsiBlast_CBE 66.5635% -90 - C3 -3I7R 3.2 DAPA_ECOLI
70 PsiBlast_CBE 65.8435% -88 - C3 -2ATS 3.6 DAPA_ECOLI
78 PsiBlast_CBE 65.8235% -88 - C3 -3I7S 2.1 DAPA_ECOLI
80 PsiBlast_CBE 65.7935% -88 - C3 -3I7R 2.0 DAPA_ECOLI
81 PsiBlast_CBE 65.3735% -89 - C3 -3I7Q 2.1 DAPA_ECOLI
82 PsiBlast_CBE 65.3135% -87 - C3 -3I7Q 2.1 DAPA_ECOLI
77 PsiBlast_CBE 64.8135% -86 - C3 -3I7S 2.3 DAPA_ECOLI
85 PsiBlast_CBE 64.5835% -93 - C3 -4PFM 2.9 ?
86 PsiBlast_CBE 64.0335% -94 - C3 -4PFM 3.4 ?
94 PsiBlast_CBE 63.9534% -83 - C3 -3FLU 2.1 DAPA_NEIMB
93 PsiBlast_CBE 63.8334% -84 - C3 -3FLU 2.2 DAPA_NEIMB
19 PsiBlast_PDB 61.3337% -83 - C3 -3PUE 2.6 ?
20 PsiBlast_PDB 61.2937% -81 - C3 -3PUL 2.7 ?
84 PsiBlast_CBE 58.7037% -81 - C3 -3VFL 1.7 ?
83 PsiBlast_CBE 58.2937% -84 - C3 -3VFL 2.2 ?