@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1491: (2016-03-26 )
MRYTKSEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHSDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLDALKIAFEKFGDDIAGVIVEPVAGNMGVVPPIEGFLQGLRDITTEYGALLIFDEVMTGFRVGYHCAQGYFGVTPDLTCLGKVIGGGLPVGAFGGKKEIMDHIAPLGNIYQAGTLSGNPLAMTSGYETLSQLTPETYEYFNMLGDILEDGLKRVFAKHNVPITVNRAGSMIGYFLNEGPVTNFEQANKSDLKLFAEMYREMAKEGVFLPPSQFEGTFLSTAHTKEDIEKTIQAFDTALSRIVK

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PXG_A_3(3FQ7)
GSA_SYNP6
[Raw transfer]




EA5_A_3(2HP1)
GSA_SYNP6
[Raw transfer]




KE4_A_3(2HP2)
GSA_SYNP6
[Raw transfer]




PXG_B_4(3FQ7)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2HOZ)
GSA_SYNP6
[Raw transfer]




PMP_A_2(3BS8)
GSA_BACSU
[Raw transfer]




IK2_A_3(4AOA)
BFAT_VARPD
[Raw transfer]




PMP_B_4(2HOZ)
GSA_SYNP6
[Raw transfer]




IK2_B_5(4AOA)
BFAT_VARPD
[Raw transfer]




PMP_B_5(3FQA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(3FQA)
GSA_SYNP6
[Raw transfer]




PMP_E_5(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_B_4(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_C_3(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_C_8(2ZSM)
GSA_AERPE
[Raw transfer]




PLR_A_3(3USF)
GSA_SYNE7
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_A_2(2ZSL)
GSA_AERPE
[Raw transfer]




PMP_B_6(2ZSM)
GSA_AERPE
[Raw transfer]




PLR_B_5(3USF)
GSA_SYNE7
[Raw transfer]




PMP_A_4(2ZSM)
GSA_AERPE
[Raw transfer]




PLR_A_3(2CFB)
GSA_THEEB
[Raw transfer]




PLP_B_4(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_A_3(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_A_3(2PB2)
ARGD_SALTY
[Raw transfer]




PLP_B_4(2GSA)
GSA_SYNP6
[Raw transfer]




PLP_B_4(2HP2)
GSA_SYNP6
[Raw transfer]




PLP_B_4(2HP1)
GSA_SYNP6
[Raw transfer]




PLP_A_5(2YKY)
?
[Raw transfer]




PLP_B_11(2YKY)
?
[Raw transfer]




PLP_C_21(2YKY)
?
[Raw transfer]




PLP_B_4(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_C_17(2YKU)
?
[Raw transfer]




PLP_B_9(2YKX)
?
[Raw transfer]




PLP_A_4(2YKU)
?
[Raw transfer]




PLP_C_11(2YKX)
?
[Raw transfer]




PLP_A_4(2YKX)
?
[Raw transfer]




PLP_B_10(2YKU)
?
[Raw transfer]




GAB_D_4(3GSB)
GSA_SYNP6
[Raw transfer]




GAB_A_4(3FQA)
GSA_SYNP6
[Raw transfer]




HOZ_B_5(2HP1)
GSA_SYNP6
[Raw transfer]




HOZ_B_5(2HP2)
GSA_SYNP6
[Raw transfer]




EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]




EDO_A_6(2E54)
ARGD_THEMA
[Raw transfer]




EDO_B_7(2PB0)
ARGD_SALTY
[Raw transfer]




EDO_C_12(2YKX)
?
[Raw transfer]




1 PsiBlast_PDB 97.2874% -95 - C1 -3BS8 3.9 GSA_BACSU
9 PsiBlast_PDB 88.4656% -94 - C1 -2HOZ 4.4 GSA_SYNP6
13 PsiBlast_PDB 86.2756% -91 - C1 -3FQ8 4.9 GSA_SYNP6
12 PsiBlast_PDB 85.9456% -92 - C1 -3FQA 4.1 GSA_SYNP6
114 HHSearch 85.7757% -90 - C1 -3FQ8 4.9 GSA_SYNP6
6 PsiBlast_PDB 85.7056% -91 - C1 -3FQ7 5.6 GSA_SYNP6
5 PsiBlast_PDB 85.5057% -91 - C1 -3GSB 4.4 GSA_SYNP6
31 PsiBlast_CBE 85.2756% -91 - C1 -3FQ8 4.0 GSA_SYNP6
21 PsiBlast_CBE 85.2557% -90 - C1 -4GSA 3.2 GSA_SYNP6
10 PsiBlast_PDB 85.2456% -92 - C1 -2HP1 5.4 GSA_SYNP6
4 PsiBlast_PDB 85.1057% -89 - C1 -4GSA 3.1 GSA_SYNP6
25 PsiBlast_CBE 84.8256% -90 * C1 *3FQ7 5.9 GSA_SYNP6
11 PsiBlast_PDB 84.4656% -92 - C1 -2HP2 5.1 GSA_SYNP6
26 PsiBlast_CBE 84.4056% -90 - C1 -2HP2 3.7 GSA_SYNP6
3 PsiBlast_PDB 84.3257% -89 - C1 -2GSA - GSA_SYNP6 -
101 Fugue 84.2157% -89 - C1 -2GSA 5.1 GSA_SYNP6
28 PsiBlast_CBE 84.0956% -92 - C1 -2HOZ 4.4 GSA_SYNP6
7 PsiBlast_PDB 83.4256% -89 - C1 -3USF 4.4 GSA_SYNE7
29 PsiBlast_CBE 83.2056% -97 - C1 -2HOY - GSA_SYNP6 -
27 PsiBlast_CBE 83.2056% -96 - C1 -2HP1 3.0 GSA_SYNP6
23 PsiBlast_CBE 82.5357% -89 - C1 -2GSA 3.4 GSA_SYNP6
30 PsiBlast_CBE 82.4256% -89 - C1 -3FQA 4.4 GSA_SYNP6
24 PsiBlast_CBE 81.7556% -97 - C1 -3USF 4.3 GSA_SYNE7
22 PsiBlast_CBE 81.7057% -89 - C1 -3GSB 4.8 GSA_SYNP6
2 PsiBlast_PDB 77.5560%-100 - C1 -2CFB 2.8 GSA_THEEB
14 PsiBlast_PDB 75.9351% -87 - C1 -2E7U 4.3 GSA_THET8
33 PsiBlast_CBE 75.8143% -90 - C1 -2ZSM 4.1 GSA_AERPE
113 HHSearch 75.7151% -84 - C1 -2E7U 4.3 GSA_THET8
15 PsiBlast_PDB 75.2943% -87 - C1 -2EPJ 4.8 GSA_AERPE
16 PsiBlast_PDB 75.1243% -87 - C1 -2ZSL 4.8 GSA_AERPE
17 PsiBlast_PDB 74.3343% -87 - C1 -2ZSM 4.3 GSA_AERPE
32 PsiBlast_CBE 74.1143% -88 - C1 -2ZSM 4.2 GSA_AERPE
119 HHSearch 65.9442% -78 - C1 -2EPJ 4.8 GSA_AERPE
19 PsiBlast_PDB 65.9333% -85 - C1 -4AO9 3.2 BFAT_VARPD
35 PsiBlast_CBE 65.6033% -86 - C1 -4AO9 3.0 BFAT_VARPD
20 PsiBlast_PDB 63.8033% -84 - C1 -4AOA 4.5 BFAT_VARPD
34 PsiBlast_CBE 61.9033% -85 - C1 -4AOA 4.4 BFAT_VARPD
42 PsiBlast_CBE 57.1031% -77 - C1 -2YKX 3.2 ?
48 PsiBlast_CBE 56.8831% -77 - C1 -2YKU 4.4 ?
39 PsiBlast_CBE 55.9831% -77 - C1 -2YKY 4.4 ?
41 PsiBlast_CBE 55.6231% -78 - C1 -2YKY 4.0 ?
44 PsiBlast_CBE 55.5431% -78 - C1 -2YKX 3.5 ?
50 PsiBlast_CBE 54.8031% -77 - C1 -2YKU 3.1 ?
49 PsiBlast_CBE 54.7231% -77 - C1 -2YKU 3.0 ?
43 PsiBlast_CBE 54.3231% -78 - C1 -2YKX 3.1 ?
40 PsiBlast_CBE 53.6631% -77 - C1 -2YKY 4.2 ?
85 PsiBlast_CBE 42.1731% -83 - C1 -2E54 3.3 ARGD_THEMA
59 PsiBlast_CBE 28.6634% -70 - C1 -4JEY 2.9 ARGD_SALTY
74 PsiBlast_CBE 26.5234% -71 - C1 -2PB2 3.8 ARGD_SALTY
76 PsiBlast_CBE 26.4734% -71 - C1 -2PB0 2.8 ARGD_SALTY