@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1861: (2016-03-29 )
MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDGFDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYEGGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKEFYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_11(4XDZ)
?
[Raw transfer]



NAP_A_3(4KQW)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NAD_B_10(4KQX)
?
[Raw transfer]



NDP_B_9(3FR8)
ILV5_ORYSJ
[Raw transfer]



NDP_A_5(3FR8)
ILV5_ORYSJ
[Raw transfer]



NAI_B_12(4XDY)
?
[Raw transfer]



HIO_B_9(4XDY)
?
[Raw transfer]



HIO_A_4(4KQX)
?
[Raw transfer]



40E_B_14(4XDZ)
?
[Raw transfer]
103 HHSearch 87.4956% -96 - C4 -1NP3 - ILVC_PSEAE -
3 PsiBlast_PDB 87.4456% -95 - C4 -1NP3 - ILVC_PSEAE -
124 Fugue 87.3156% -95 - C4 -1NP3 - ILVC_PSEAE -
1 PsiBlast_PDB 87.0563% -90 - C4 -4TSK 10.5 ?
22 PsiBlast_CBE 85.6356% -95 - C4 -4XIY - ILVC_AZOVD -
21 PsiBlast_CBE 85.5456% -91 - C4 -4XIY - ILVC_AZOVD -
25 PsiBlast_CBE 84.7855% -87 - C4 -4KQX 7.7 ?
4 PsiBlast_PDB 84.6355% -90 - C4 -4KQW 9.0 ?
23 PsiBlast_CBE 84.5956% -93 - C4 -4XIY - ILVC_AZOVD -
5 PsiBlast_PDB 83.9055% -89 - C4 -4KQX - ? -
26 PsiBlast_CBE 80.1549% -88 - C4 -4XDY 8.4 ?
6 PsiBlast_PDB 79.9349% -88 - C4 -4XDY - ? -
7 PsiBlast_PDB 79.5448% -91 - C4 -4XDZ - ? -
27 PsiBlast_CBE 79.3148% -89 - C4 -4XDZ 11.3 ?
8 PsiBlast_PDB 79.1348% -94 - C4 -4XEH - ? -
24 PsiBlast_CBE 72.9055% -18 - C- -4KQW - ? -
2 PsiBlast_PDB 69.0856% -28 - C- -4XIY - ILVC_AZOVD -
104 HHSearch 65.6930% -76 - C4 -3FR7 - ILV5_ORYSJ -
10 PsiBlast_PDB 65.3633% -83 - C4 -1YRL - ILVC_ECOLI -
32 PsiBlast_CBE 60.7433% -87 - C4 -1YVE - ILV5_SPIOL -
30 PsiBlast_CBE 58.1133% -88 - C4 -3FR8 5.9 ILV5_ORYSJ
12 PsiBlast_PDB 57.6533% -84 - C4 -3FR8 4.6 ILV5_ORYSJ