@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2235: (2016-04-02 )
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BET_A_3(3PPP)
OPUCC_BACSU
[Raw transfer]




DCK_B_4(3PPO)
OPUCC_BACSU
[Raw transfer]




BET_B_4(3PPP)
OPUCC_BACSU
[Raw transfer]




4CS_A_3(3PPR)
OPUCC_BACSU
[Raw transfer]




4CS_B_4(3PPR)
OPUCC_BACSU
[Raw transfer]




DCK_A_3(3PPO)
OPUCC_BACSU
[Raw transfer]




PGE_A_3(3O66)
?
[Raw transfer]




PGE_A_3(3O66)
?
[Raw transfer]




EPE_A_5(3MAM)
?
[Raw transfer]




26 HHSearch 98.83100% -79 - C3 -3O66 2.4 ?
1 PsiBlast_PDB 98.7597% -77 - C3 -3O66 2.4 ?
2 PsiBlast_PDB 84.5156% -70 - C3 -3PPN - OPUCC_BACSU -
5 PsiBlast_PDB 83.6056% -72 - C3 -3PPQ - OPUCC_BACSU -
3 PsiBlast_PDB 83.2656% -70 - C3 -3PPO 3.1 OPUCC_BACSU
4 PsiBlast_PDB 83.1556% -74 - C3 -3PPP 2.6 OPUCC_BACSU
6 PsiBlast_PDB 82.9656% -71 - C3 -3PPR 2.7 OPUCC_BACSU
7 PsiBlast_PDB 82.6555% -70 - C3 -3R6U - OPUBC_BACSU -
21 PsiBlast_CBE 82.4756% -76 - C3 -3PPR 2.6 OPUCC_BACSU
29 HHSearch 82.4055% -72 - C3 -3R6U - OPUBC_BACSU -
24 PsiBlast_CBE 82.1156% -74 - C3 -3PPO 2.7 OPUCC_BACSU
22 PsiBlast_CBE 82.0456% -73 - C3 -3PPQ - OPUCC_BACSU -
23 PsiBlast_CBE 81.7656% -76 - C3 -3PPP 2.8 OPUCC_BACSU
25 HHSearch 71.6729% -69 - C3 -1SW5 - ? -
46 Fugue 71.4129% -68 - C3 -1SW5 - ? -
13 PsiBlast_PDB 70.4225% -67 - C3 -4WEP - ? -
9 PsiBlast_PDB 70.2029% -63 - C3 -1SW5 - ? -
8 PsiBlast_PDB 69.8329% -52 - C3 -1SW4 - ? -
11 PsiBlast_PDB 69.2829% -61 - C3 -3MAM 1.9 ?
12 PsiBlast_PDB 68.9928% -52 - C3 -1SW1 - ? -