@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0223: (2015-12-13 )
MLFSKLFAPTLKEPPKDAVLKSPKHPGKAGYIYQIGSGIYNFLPLAKKVLDKIENVTHKRMQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAANFIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSAYKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNCDYAANIEIAKRSKRTEPLMSPSALAKFPTPNTTSAPSVAEFFKTEPYFVLKALVNKVIHKDKETLACFFVRGDDNLEETKALNTLNLLGANALELREANEEDLNKAGLIAGFIGPYGLKKHVCYIIFDEDLKEGDCLIVGANEKDFHAVGVDLKGFENLVYADIVQVKESDCCPNCQGALKYHKSLEVGHIFKLGQSYAKSLKASFLDKNGKERFFEMGCYGIGISRLLSVILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGVDALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEKILEMLASE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]
63 Fugue 97.5141% -78 - C1 -2J3L 9.2 SYP_ENTFA
1 PsiBlast_PDB 97.4341% -77 - C1 -2J3L - SYP_ENTFA -
22 PsiBlast_CBE 96.7641% -77 - C1 -2J3L - SYP_ENTFA -
2 PsiBlast_PDB 96.4641% -78 - C1 -2J3M - SYP_ENTFA -
42 HHSearch 96.2841% -75 - C1 -2J3L 9.2 SYP_ENTFA
21 PsiBlast_CBE 95.9841% -75 - C1 -2J3M - SYP_ENTFA -
43 HHSearch 80.6936% -62 - C1 -2I4L - SYP_RHOPA -
45 HHSearch 70.5325% -83 - C1 -1NJ8 - SYP_METJA -
46 HHSearch 68.4122% -75 - C1 -3IAL - ? -
44 HHSearch 68.3323% -75 * C1 *1NJ1 - SYP_METTH -
47 HHSearch 67.9522% -76 - C1 -1HC7 - SYP_THET8 -
50 HHSearch 67.2919% -72 - C1 -3UH0 - SYTM_YEAST -
49 HHSearch 66.5918% -55 - C1 -1NYR - SYT_STAAW -
65 Fugue 65.0023% -54 - C1 -1HC7 - SYP_THET8 -
52 HHSearch 64.0020% -64 - C1 -1EVL - SYT_ECOLI -
55 HHSearch 62.6517% -55 - C1 -2ZT5 - SYG_HUMAN -
48 HHSearch 62.5819% -64 - C1 -1QF6 - SYT_ECOLI -
51 HHSearch 61.7216% -56 - C1 -3A32 - SYT1_AERPE -
70 Fugue 59.5215% -50 - C1 -3A32 - SYT1_AERPE -
54 HHSearch 59.2117% -44 - C1 -1ATI - SYG_THET8 -