@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0740: (2015-12-18 )
MILRRVTEALEAYKNGEMLIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKDLANKFELPPMVSVNDSNHETAFTVSIDAKEAKTGISAFERHLTIELLCKDTTKPSDFVRPGHIFPLIAKDGGVLARTGHTEASVDLCKLAGLKPVSVICEIMKEDGSMARRGDKFLSDFAIKHNLKTLYVSDLISYRLENESLLKMFCQEEREFLKHQTQCYTFLDHQQKNHYAFKFKGAKTHDLAPLVRFHPIKEDFDFLTTGAFEAFFKALEYLKREGGYLIFMNTHSEQNNIVKDFGIGALVLKNLGVKDFRLLSSCEDRQYKALSGFGLKLVETISL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5RP_A_3(4P77)
RIBB_VIBCH
[Raw transfer]




5SP_A_3(3LQU)
RIBB_SALTY
[Raw transfer]




5RP_B_4(1SNN)
RIBB_METJA
[Raw transfer]




5RP_B_5(4P77)
RIBB_VIBCH
[Raw transfer]




5RP_A_3(1PVY)
RIBB_METJA
[Raw transfer]




5RP_A_3(1SNN)
RIBB_METJA
[Raw transfer]




RES_B_4(4P6C)
RIBB_VIBCH
[Raw transfer]




RES_A_3(4P6C)
RIBB_VIBCH
[Raw transfer]




RES_A_3(4P6P)
RIBB_VIBCH
[Raw transfer]




5RP_B_4(1PVY)
RIBB_METJA
[Raw transfer]




5RP_A_3(1SNN)
RIBB_METJA
[Raw transfer]




RES_B_7(4P6P)
RIBB_VIBCH
[Raw transfer]




5RP_A_3(4P8E)
RIBB_VIBCH
[Raw transfer]




GOL_A_5(1K4O)
RIB3_MAGO7
[Raw transfer]




5RP_D_4(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_C_3(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_B_8(4P8E)
RIBB_VIBCH
[Raw transfer]




5RP_A_2(2RIU)
RIB3_CANAL
[Raw transfer]




GOL_B_10(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_A_5(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_A_5(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_B_12(3MIO)
RIBBA_MYCTA
[Raw transfer]




2 PsiBlast_PDB 92.4635%-110 - C9 -4I14 - RIBBA_MYCTA -
1 PsiBlast_PDB 90.9555%-113 - C9 -4FFJ - ? -
38 PsiBlast_CBE 85.7242%-109 - C9 -1K4L - RIB3_MAGO7 -
50 HHSearch 85.6243%-106 - C9 -1K4I - RIB3_MAGO7 -
36 PsiBlast_CBE 85.4942%-110 - C9 -1K4P - RIB3_MAGO7 -
39 PsiBlast_CBE 85.3242%-112 - C9 -1K4I - RIB3_MAGO7 -
47 HHSearch 85.0948%-110 - C9 -1TKS - RIB3_CANAL -
61 Fugue 85.0243%-122 - C9 -1G57 - RIBB_ECOLI -
60 Fugue 84.7943%-109 * C9 *1G57 - RIBB_ECOLI -
37 PsiBlast_CBE 84.5642%-110 - C9 -1K4O 3.5 RIB3_MAGO7
40 PsiBlast_CBE 84.5542%-112 - C9 -1K49 - RIB3_MAGO7 -
48 HHSearch 84.1345%-107 - C9 -1G57 - RIBB_ECOLI -
6 PsiBlast_PDB 84.0249%-109 - C9 -2RIU 3.6 RIB3_CANAL
3 PsiBlast_PDB 83.7949%-109 - C9 -1TKS - RIB3_CANAL -
19 PsiBlast_PDB 83.7546%-114 - C9 -3MGZ - RIBBA_MYCTA -
21 PsiBlast_CBE 82.9949%-109 - C9 -1TKU 3.1 RIB3_CANAL
27 PsiBlast_CBE 82.9745%-106 - C9 -3LS6 - RIBB_SALTY -
22 PsiBlast_CBE 82.8744%-102 - C9 -4P8E 4.0 RIBB_VIBCH
35 PsiBlast_CBE 82.8546%-112 - C9 -3MK5 - RIBBA_MYCTA -
4 PsiBlast_PDB 82.8049%-109 - C9 -1TKU 3.0 RIB3_CANAL
23 PsiBlast_CBE 82.7544%-106 - C9 -4P77 5.1 RIBB_VIBCH
24 PsiBlast_CBE 82.5844%-104 - C9 -4P6P 4.5 RIBB_VIBCH
20 PsiBlast_PDB 82.5846%-108 - C9 -3MIO 2.9 RIBBA_MYCTA
7 PsiBlast_PDB 82.5444%-101 - C9 -4P6C 4.8 RIBB_VIBCH
26 PsiBlast_CBE 82.5144%-103 - C9 -4P6C 4.7 RIBB_VIBCH
51 HHSearch 82.4247%-106 - C9 -3MIO 2.9 RIBBA_MYCTA
10 PsiBlast_PDB 82.1944%-102 - C9 -4P77 4.8 RIBB_VIBCH
34 PsiBlast_CBE 81.9546%-105 - C9 -3MIO 3.1 RIBBA_MYCTA
9 PsiBlast_PDB 81.7844%-104 - C9 -4P6P 4.5 RIBB_VIBCH
13 PsiBlast_PDB 81.6545%-105 - C9 -3LQU 3.6 RIBB_SALTY
11 PsiBlast_PDB 81.4244%-102 - C9 -4P8E 3.9 RIBB_VIBCH
49 HHSearch 77.9238% -91 - C9 -1SNN 4.3 RIBB_METJA
45 PsiBlast_CBE 77.6834% -97 - C9 -1PVY 3.7 RIBB_METJA
43 PsiBlast_CBE 76.8034% -97 - C9 -1SNN 4.1 RIBB_METJA
44 PsiBlast_CBE 75.6234% -88 - C9 -1SNN 4.3 RIBB_METJA
46 PsiBlast_CBE 75.5634% -89 - C9 -1PVY 4.4 RIBB_METJA