@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0509: (2016-03-16 )
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_B_12(2HCR)
PRPS1_HUMAN
[Raw transfer]



AMP_A_11(2HCR)
PRPS1_HUMAN
[Raw transfer]



AMP_B_13(3DAH)
?
[Raw transfer]



ABM_F_6(1DKU)
KPRS_BACSU
[Raw transfer]



APC_A_4(3LPN)
KPRS_THEVO
[Raw transfer]



ADP_A_7(3LRT)
KPRS_THEVO
[Raw transfer]



AMP_A_11(3DAH)
?
[Raw transfer]



AMP_B_12(3DAH)
?
[Raw transfer]



ABM_E_5(1DKU)
KPRS_BACSU
[Raw transfer]



ABM_E_5(1DKU)
KPRS_BACSU
[Raw transfer]



AMP_J_10(1U9Z)
KPRS_METJA
[Raw transfer]



AMP_L_12(1U9Z)
KPRS_METJA
[Raw transfer]



AMP_I_9(1U9Z)
KPRS_METJA
[Raw transfer]



AMP_K_11(1U9Z)
KPRS_METJA
[Raw transfer]
1 PsiBlast_PDB 97.0056%-147 - C5 -1DKU - KPRS_BACSU -
22 PsiBlast_CBE 96.9856%-147 - C5 -1DKR - KPRS_BACSU -
21 PsiBlast_CBE 96.8156%-148 - C5 -1DKU 3.1 KPRS_BACSU
47 Fugue 96.3055%-140 - C5 -1DKU 3.0 KPRS_BACSU
60 HHSearch 95.9956%-143 - C5 -1DKU 3.0 KPRS_BACSU
10 PsiBlast_PDB 93.2741%-139 - C5 -3S5J - PRPS1_HUMAN -
58 HHSearch 93.1842%-136 * C5 *3S5J - PRPS1_HUMAN -
5 PsiBlast_PDB 93.0641%-139 - C5 -4LYG - PRPS1_HUMAN -
27 PsiBlast_CBE 93.0241%-141 - C5 -4LYG - PRPS1_HUMAN -
35 PsiBlast_CBE 92.9041%-141 - C5 -4M0P - PRPS1_HUMAN -
26 PsiBlast_CBE 92.6241%-139 - C5 -4LZO - PRPS1_HUMAN -
31 PsiBlast_CBE 92.6041%-138 - C5 -2HCR 3.3 PRPS1_HUMAN
28 PsiBlast_CBE 92.4341%-137 - C5 -2H08 - PRPS1_HUMAN -
13 PsiBlast_PDB 92.3841%-136 - C5 -4M0P - PRPS1_HUMAN -
9 PsiBlast_PDB 92.3641%-140 - C5 -3EFH - PRPS1_HUMAN -
32 PsiBlast_CBE 92.3541%-134 - C5 -2H06 - PRPS1_HUMAN -
34 PsiBlast_CBE 92.3241%-137 - C5 -4LZN - PRPS1_HUMAN -
12 PsiBlast_PDB 92.2941%-138 - C5 -4LZN - PRPS1_HUMAN -
11 PsiBlast_PDB 92.2441%-138 - C5 -4F8E - PRPS1_HUMAN -
25 PsiBlast_CBE 92.1642%-138 - C5 -2H07 - PRPS1_HUMAN -
8 PsiBlast_PDB 91.8741%-139 - C5 -2HCR 3.2 PRPS1_HUMAN
24 PsiBlast_CBE 89.5042%-135 - C5 -3DAH 3.6 ?
23 PsiBlast_CBE 88.8342%-136 - C5 -3DAH 4.1 ?
59 HHSearch 84.9740%-128 - C5 -3DAH 3.9 ?
43 PsiBlast_CBE 72.5431%-138 - C5 -1U9Z 5.7 KPRS_METJA
42 PsiBlast_CBE 72.4531%-137 - C5 -1U9Z 3.2 KPRS_METJA
18 PsiBlast_PDB 72.3831%-138 - C5 -1U9Z 3.9 KPRS_METJA
44 PsiBlast_CBE 72.2931%-137 - C5 -1U9Z 3.9 KPRS_METJA
20 PsiBlast_PDB 70.1730% -99 - C5 -3LPN 6.0 KPRS_THEVO