@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0667: (2016-03-17 )
MTYALEIKGLRKIYSTGVEALRGVDLTVEEGDFYALLGPNGAGKSTTIGIITSLVNKTSGQVSVFGYDLDTDIVRAKQQIGLVPQEFNFNPFETVQQIVVNQAGYYGVSRKEAIKRSEKYLKQSNLWEKRSERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRREMWTFLRELNESGTTIILTTHYLEEAEMLCRNIGIIQSGELIENTSMKSLLSKLQFETFIFDLEPYEEAFEITGYNHVFEDKQTLSVEVERNQGVNHIFEQLSEHGIKVLSMRNKSNRLEELFLKITEEKHQVGEKHV

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]
85 Fugue 87.1826% -83 - C1 -3TUZ - METN_ECOLI -
91 Fugue 87.0628% -78 - C1 -3B60 - MSBA_SALTY -
1 PsiBlast_PDB 83.4035% -92 - C1 -1VPL - ? -
5 PsiBlast_PDB 81.9932% -99 - C1 -3TUZ - METN_ECOLI -
4 PsiBlast_PDB 81.1732% -96 - C1 -3TUI - METN_ECOLI -
80 HHSearch 81.1436% -89 - C1 -1VPL - ? -
25 PsiBlast_CBE 80.4232% -89 - C1 -3TUI - METN_ECOLI -
70 HHSearch 80.3332% -94 * C1 *3TUI - METN_ECOLI -
83 HHSearch 80.0431% -90 - C1 -1B0U 5.6 HISP_SALTY
26 PsiBlast_CBE 79.2632% -91 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 79.2532% -93 - C1 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 78.7432% -91 - C1 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 78.5432% -91 - C1 -3TUZ - METN_ECOLI -
74 HHSearch 78.4431% -88 - C1 -3GFO - ECFA3_CLOP1 -
22 PsiBlast_CBE 78.4232% -92 - C1 -3TUZ - METN_ECOLI -
3 PsiBlast_PDB 78.1532% -93 - C1 -3DHW - METN_ECOLI -
19 PsiBlast_PDB 77.3032% -91 - C1 -3GFO - ECFA3_CLOP1 -
20 PsiBlast_PDB 75.7028% -98 - C1 -4U00 - ? -
64 HHSearch 70.5330% -80 - C1 -1Z47 - ? -
13 PsiBlast_PDB 70.2628% -94 - C1 -2OLJ - ? -
39 PsiBlast_CBE 67.9231% -77 - C1 -4QC2 7.0 ?
38 PsiBlast_CBE 66.6931% -74 - C1 -4QC2 7.2 ?
28 PsiBlast_CBE 65.9931% -90 - C1 -4YMU 4.4 ?
9 PsiBlast_PDB 65.2831% -89 - C1 -4YMU 4.9 ?
10 PsiBlast_PDB 65.1431% -88 - C1 -4YMV 3.9 ?
27 PsiBlast_CBE 64.1631% -89 - C1 -4YMV 3.7 ?
35 PsiBlast_CBE 63.1034% -83 - C1 -3TIF 3.1 Y796_METJA
30 PsiBlast_CBE 62.1934% -85 - C1 -1L2T 6.4 Y796_METJA
36 PsiBlast_CBE 62.0634% -80 - C1 -3TIF 6.0 Y796_METJA
31 PsiBlast_CBE 61.4834% -82 - C1 -1L2T 6.5 Y796_METJA
58 PsiBlast_CBE 52.5231% -59 - C1 -2ONJ 6.0 Y1866_STAAM
59 PsiBlast_CBE 52.3831% -59 - C1 -2ONJ 5.7 Y1866_STAAM
60 PsiBlast_CBE 51.9031% -60 - C1 -2HYD 3.2 Y1866_STAAM
61 PsiBlast_CBE 51.6431% -59 - C1 -2HYD 3.4 Y1866_STAAM
2 PsiBlast_PDB 41.8433% 16 - C1 -4YER 4.6 ?