@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0807: (2016-03-18 )
VTETIIRFENVTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASKGQIYLGDKVINQIPANKRPVNTVFQDYALFPHLNVYENVAFGLRIKKLKKEAIDEKVKEALRFVNLKGYEKREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITFIFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQDFEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGCIDIDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




115 HHSearch 91.6039%-113 - C2 -1Z47 - ? -
131 Fugue 91.5139%-106 - C2 -1Z47 - ? -
1 PsiBlast_PDB 89.8342%-107 - C2 -1Z47 - ? -
2 PsiBlast_PDB 89.8240%-113 - C2 -2D62 - ? -
21 PsiBlast_CBE 89.3942%-107 - C2 -1Z47 - ? -
3 PsiBlast_PDB 89.2342%-114 - C2 -4TQU - ? -
4 PsiBlast_PDB 88.1242%-113 - C2 -4TQV - ? -
22 PsiBlast_CBE 87.9942%-104 - C2 -2IT1 - ? -
5 PsiBlast_PDB 87.8842%-101 - C2 -2IT1 - ? -
116 HHSearch 86.5236%-102 - C2 -3RLF - MALK_ECOLI -
110 HHSearch 84.4740%-102 - C2 -2IT1 - ? -
112 HHSearch 84.0738% -99 - C2 -2YYZ - ? -
118 HHSearch 82.5833%-102 - C2 -1OXX - ? -
111 HHSearch 81.0339%-105 - C2 -1V43 - ? -
133 Fugue 80.5134% -90 - C2 -1OXS - ? -
8 PsiBlast_PDB 76.8043%-101 - C2 -2YYZ - ? -
41 PsiBlast_CBE 76.4538%-103 - C2 -1OXV - ? -
27 PsiBlast_CBE 75.7245%-114 - C2 -3PUZ - MALK_ECOLI -
18 PsiBlast_PDB 75.6045%-116 - C2 -3PUV - MALK_ECOLI -
15 PsiBlast_PDB 75.5245%-113 - C2 -3PUY - MALK_ECOLI -
51 PsiBlast_CBE 73.0133% -95 - C2 -3FVQ 7.5 FBPC_NEIG1
52 PsiBlast_CBE 72.6533% -97 - C2 -3FVQ 6.8 FBPC_NEIG1
61 PsiBlast_CBE 62.5833%-103 - C2 -4U00 5.9 ?
66 PsiBlast_CBE 56.6133% -99 - C2 -3C41 3.9 ?
76 PsiBlast_CBE 56.3933% -94 - C2 -2OLK 4.4 ?
65 PsiBlast_CBE 56.2235% -98 - C2 -4YMU 4.4 ?
81 PsiBlast_CBE 56.0433% -98 - C2 -2OLJ 4.3 ?
62 PsiBlast_CBE 55.9335% -94 - C2 -4YMV 4.1 ?
68 PsiBlast_CBE 55.5233% -97 - C2 -3C4J 3.7 ?
78 PsiBlast_CBE 55.3233% -94 - C2 -2OLK 4.2 ?
64 PsiBlast_CBE 55.2935% -96 - C2 -4YMU 4.8 ?
77 PsiBlast_CBE 55.2833% -98 - C2 -2OLK 4.6 ?
87 PsiBlast_CBE 55.1832% -97 - C2 -3TIF 3.4 Y796_METJA
63 PsiBlast_CBE 55.0935% -92 - C2 -4YMV 4.3 ?
79 PsiBlast_CBE 55.0433% -99 - C2 -2OLK 4.3 ?
70 PsiBlast_CBE 54.8233% -98 - C2 -2Q0H 4.3 ?
67 PsiBlast_CBE 54.4833% -92 - C2 -3C41 5.2 ?
80 PsiBlast_CBE 54.3233% -88 - C2 -2OLJ 3.8 ?
71 PsiBlast_CBE 54.3233% -95 - C2 -2Q0H 3.5 ?
85 PsiBlast_CBE 53.4634% -95 - C2 -1L2T 6.5 Y796_METJA
69 PsiBlast_CBE 53.2933% -90 - C2 -3C4J 5.0 ?
83 PsiBlast_CBE 53.2232% -95 - C2 -4MKI 2.1 ECFA2_CALS4
82 PsiBlast_CBE 52.6932% -93 - C2 -4MKI 2.3 ECFA2_CALS4