@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0979: (2016-03-20 )
MKEVMIKATGLEKSFKKTEVLKGVDFEVKHGEIFALLGSNGAGKTTTIQILATLLKADNGNAHISGFDVKTEPEKVRKHISLTGQFAAVDGLLTGRENILLIAKLRGEKNPAQTADDLLARFGLEKAADRRADTYSGGMTRRLDIAMSLVGSPDVIFLDEPTTGLDPEGRMEVWKTIKTLSDGGTTILLTTQYLDEAEQLADRIAILHGGTIIANGTLDELKKLFPPAEVEYIEKQPSLEEIFLAIINGKEEVK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ATP_B_5(4QC2)
?
[Raw transfer]



ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



ADP_D_7(4HLU)
ECFA1_THEMA
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]
85 HHSearch 87.6739%-104 - C1 -1VPL - ? -
2 PsiBlast_PDB 83.3638%-107 - C1 -1VPL - ? -
11 PsiBlast_PDB 79.4133% -99 - C1 -2OUK - ? -
9 PsiBlast_PDB 79.2733% -94 - C1 -2OLJ 5.9 ?
82 HHSearch 78.5532% -88 * C1 *2OLJ 5.9 ?
27 PsiBlast_CBE 78.5033% -93 - C1 -2OUK - ? -
31 PsiBlast_CBE 78.3833% -92 - C1 -2OLK 6.1 ?
13 PsiBlast_PDB 78.3433% -94 - C1 -3C4J - ? -
33 PsiBlast_CBE 77.8631% -92 - C1 -4U02 - ? -
30 PsiBlast_CBE 77.8533% -97 - C1 -2OLK - ? -
23 PsiBlast_CBE 77.7633% -98 - C1 -3C41 5.9 ?
15 PsiBlast_PDB 77.7131% -90 - C1 -4U02 - ? -
29 PsiBlast_CBE 77.5733% -90 - C1 -2OLK 6.1 ?
35 PsiBlast_CBE 77.5131% -91 - C1 -4U02 - ? -
24 PsiBlast_CBE 77.4233% -97 - C1 -3C4J - ? -
22 PsiBlast_CBE 77.4134% -91 - C1 -4YMU - ? -
37 PsiBlast_CBE 77.2532% -88 - C1 -4P32 6.7 LPTB_ECOLI
8 PsiBlast_PDB 77.0833% -94 - C1 -3C41 6.2 ?
14 PsiBlast_PDB 77.0331% -97 - C1 -4U00 - ? -
28 PsiBlast_CBE 77.0233% -95 - C1 -2OUK - ? -
18 PsiBlast_PDB 76.7932% -86 - C1 -4P33 7.8 LPTB_ECOLI
32 PsiBlast_CBE 76.3433% -93 - C1 -2OLJ 5.7 ?
17 PsiBlast_PDB 75.9832% -87 - C1 -4P32 6.3 LPTB_ECOLI
36 PsiBlast_CBE 75.5132% -79 - C1 -4QC2 7.4 ?
38 PsiBlast_CBE 75.5032% -84 - C1 -4P33 7.5 LPTB_ECOLI
16 PsiBlast_PDB 74.6632% -81 - C1 -4QC2 7.2 ?
1 PsiBlast_PDB 63.2048% 7 - C1 -4YER 5.5 ?
60 PsiBlast_CBE 59.6131% -88 - C1 -4HLU 4.4 ECFA1_THEMA
59 PsiBlast_CBE 59.3731% -89 - C1 -4HLU 3.8 ECFA1_THEMA
20 PsiBlast_PDB 46.4332% 4 - C1 -4P31 6.3 LPTB_ECOLI