@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1313: (2016-03-23 )
MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVELGVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQTSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILMAKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSFTEQGNNIKRVILGEKIGTTVRGKK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]




UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]




UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]




GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]




51 HHSearch 93.2062%-119 - C1 -1Z9D - PYRH_STRP1 -
1 PsiBlast_PDB 91.0958%-119 - C1 -1Z9D - PYRH_STRP1 -
48 HHSearch 87.9651%-114 - C1 -3EK6 - PYRH_XANCP -
22 PsiBlast_CBE 87.8850%-112 - C1 -3EK5 - PYRH_XANCP -
23 PsiBlast_CBE 87.7050%-115 - C1 -3EK5 - PYRH_XANCP -
3 PsiBlast_PDB 87.5550%-114 - C1 -3EK6 - PYRH_XANCP -
49 HHSearch 86.8753%-115 - C1 -1YBD 2.9 PYRH_NEIMB
31 PsiBlast_CBE 86.7046%-123 - C1 -2V4Y - PYRH_ECOLI -
5 PsiBlast_PDB 86.6046%-121 - C1 -2BND 7.7 PYRH_ECOLI
33 PsiBlast_CBE 86.3246%-123 - C1 -2V4Y - PYRH_ECOLI -
6 PsiBlast_PDB 86.3046%-122 - C1 -2BNE 5.7 PYRH_ECOLI
24 PsiBlast_CBE 86.2850%-115 - C1 -3EK5 - PYRH_XANCP -
7 PsiBlast_PDB 86.1846%-124 - C1 -2V4Y - PYRH_ECOLI -
2 PsiBlast_PDB 86.1850%-113 - C1 -3EK5 - PYRH_XANCP -
25 PsiBlast_CBE 86.1750%-110 - C1 -3EK5 - PYRH_XANCP -
71 Fugue 86.0946%-119 * C1 *2BNE 5.7 PYRH_ECOLI
10 PsiBlast_PDB 85.1644%-121 - C1 -2BNF 7.9 PYRH_ECOLI
27 PsiBlast_CBE 84.8354%-135 - C1 -3NWY - PYRH_MYCTU -
34 PsiBlast_CBE 84.7046%-126 - C1 -2V4Y - PYRH_ECOLI -
53 HHSearch 84.5153%-126 - C1 -3NWY - PYRH_MYCTU -
11 PsiBlast_PDB 84.3551%-118 - C1 -1YBD 2.9 PYRH_NEIMB
29 PsiBlast_CBE 82.1146%-120 - C1 -2BND 7.5 PYRH_ECOLI
35 PsiBlast_CBE 81.8846%-113 - C1 -2BNE 5.9 PYRH_ECOLI
42 PsiBlast_CBE 81.7453%-124 - C1 -4A7W 2.6 PYRH_HELPY
12 PsiBlast_PDB 80.2753%-119 - C1 -4A7W 3.2 PYRH_HELPY