@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2041: (2016-03-31 )
MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLRVIEKIIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_A_5(1M6Y)
RSMH_THEMA
[Raw transfer]




SAH_A_5(1M6Y)
RSMH_THEMA
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




SAM_C_3(1WG8)
RSMH_THET8
[Raw transfer]




SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




SAM_A_5(1N2X)
RSMH_THEMA
[Raw transfer]




SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




44 HHSearch 93.6050% -64 * C2 *1WG8 9.8 RSMH_THET8
21 PsiBlast_CBE 92.4645% -65 - C2 -1WG8 9.3 RSMH_THET8
2 PsiBlast_PDB 91.7445% -62 - C2 -1WG8 9.8 RSMH_THET8
1 PsiBlast_PDB 91.7244% -67 - C2 -3TKA 9.3 RSMH_ECOLI
43 HHSearch 91.3344% -69 - C2 -1M6Y 7.6 RSMH_THEMA
42 HHSearch 91.2845% -64 - C2 -3TKA 9.3 RSMH_ECOLI
4 PsiBlast_PDB 89.4040% -67 - C2 -1N2X 8.6 RSMH_THEMA
3 PsiBlast_PDB 89.1940% -68 - C2 -1M6Y 7.6 RSMH_THEMA
24 PsiBlast_CBE 56.6031% -70 - C2 -3EEY - ? -
26 PsiBlast_CBE 56.4431% -73 - C2 -3EEY - ? -
29 PsiBlast_CBE 56.3631% -71 - C2 -3EEY - ? -
27 PsiBlast_CBE 55.8931% -71 - C2 -3EEY - ? -
28 PsiBlast_CBE 55.8231% -72 - C2 -3EEY - ? -
22 PsiBlast_CBE 55.8231% -70 - C2 -3EEY - ? -
5 PsiBlast_PDB 55.8231% -72 - C2 -3EEY - ? -
25 PsiBlast_CBE 55.5831% -71 - C2 -3EEY - ? -
6 PsiBlast_PDB 54.7427% -76 - C2 -4PON - ? -
66 Fugue 52.3522% -42 - C2 -3EEY - ? -
7 PsiBlast_PDB 52.1027% -71 - C2 -4POO - ? -
47 HHSearch 51.0919% -52 - C2 -1O54 - ? -