@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2580: (2016-04-05 )
MTLMMKNITKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAGKSTFLSIAGALLSPTEGEIAIGGKVLNDLTSKDLTKVRLDKVGFIFQGANLIPYLNVRDQLLVIAELSGDKGRVAKEKADELLKELGLTARENNYPESLSGGEKQRVAIARALMNDPDIILADEPTASLDASRGHKVVQMIADEVKRKNKAAIMVTHDERVLDLVDRVIRIEDGYLKD

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_B_3(4FWI)
?
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]



ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]



ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]
129 HHSearch 89.9345% -99 - C1 -3TIF - Y796_METJA -
21 PsiBlast_CBE 89.4546% -98 - C1 -3TIF - Y796_METJA -
22 PsiBlast_CBE 88.8846% -97 - C1 -1L2T - Y796_METJA -
2 PsiBlast_PDB 86.4146% -95 - C1 -3TIF - Y796_METJA -
1 PsiBlast_PDB 86.3646% -95 - C1 -1F3O - Y796_METJA -
3 PsiBlast_PDB 86.0346% -94 - C1 -1L2T - Y796_METJA -
105 Fugue 83.8736% -99 - C1 -3TUZ - METN_ECOLI -
126 HHSearch 81.9141% -94 - C1 -2PCJ - LOLD_AQUAE -
113 HHSearch 81.7336%-102 - C1 -3TUI - METN_ECOLI -
14 PsiBlast_PDB 78.9538% -93 - C1 -4YMW - ? -
12 PsiBlast_PDB 78.5338% -91 - C1 -4YMU - ? -
30 PsiBlast_CBE 78.2138% -92 - C1 -4YMV - ? -
13 PsiBlast_PDB 78.0938% -89 - C1 -4YMV - ? -
31 PsiBlast_CBE 77.9938% -92 - C1 -4YMU - ? -
11 PsiBlast_PDB 77.7538% -91 - C1 -4YMT - ? -
10 PsiBlast_PDB 77.3138% -93 - C1 -4YMS - ? -
118 HHSearch 76.8435%-107 - C1 -3RLF - MALK_ECOLI -
8 PsiBlast_PDB 76.1736%-100 - C1 -3TUZ - METN_ECOLI -
92 PsiBlast_CBE 75.2832% -92 - C1 -3FVQ 7.2 FBPC_NEIG1
91 PsiBlast_CBE 75.1132% -93 - C1 -3FVQ 7.6 FBPC_NEIG1
96 PsiBlast_CBE 69.1633% -94 - C1 -4FWI 5.4 ?
101 PsiBlast_CBE 67.1031% -97 - C1 -4P32 6.3 LPTB_ECOLI
102 PsiBlast_CBE 66.9431% -91 - C1 -4QC2 7.5 ?
100 PsiBlast_CBE 66.1531% -98 - C1 -4P32 6.7 LPTB_ECOLI
95 PsiBlast_CBE 60.7636% -84 - C1 -1B0U 4.4 HISP_SALTY
98 PsiBlast_CBE 43.2234% -68 - C1 -4HLU 3.1 ECFA2_THEMA
97 PsiBlast_CBE 42.9234% -66 - C1 -4HLU 3.6 ECFA2_THEMA
99 PsiBlast_CBE 41.5834% -73 - C1 -4ZIR 3.5 ECFA2_THEMA