@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2842: (2016-04-07 )
LASTIYDIAKHAGVSKSTVSRVLNNQANISEESRKKVLAAIDQLNYQPSKLARALTSSGFDAIMVISNRSTTTTTGNPFFSEIIQSISTQAELENFDLILQTAKNSEDELKKCLSKIQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNIYSVDTDNFGDSYALTKHLIKQGHQKIACIHAPLDYHVSIDRLAGFRSCLFDHQLDLRNDWIIDSGYSIEDSYKAALRLMEGPDKPTAVFATDDLKVLSIYKMAADKNLQIPTDFSVIGYNDKVASSFLSPPLTSIDIPINKLGKKATNLLFRLIHQDKNVPKTTIIQTEMIERESIQKINA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_M_1(1QPZ)
PURR_ECOLI
[Raw transfer]
-
6 PsiBlast_PDB 90.9530%-101 - C3 -1QQB - PURR_ECOLI -
10 PsiBlast_PDB 90.9430%-104 - C3 -1QP0 - PURR_ECOLI -
13 PsiBlast_PDB 90.5630% -99 - C3 -1ZAY - PURR_ECOLI -
7 PsiBlast_PDB 90.4230%-104 - C3 -1PNR - PURR_ECOLI -
11 PsiBlast_PDB 90.3630%-102 - C3 -1QP4 - PURR_ECOLI -
5 PsiBlast_PDB 90.2830%-102 - C3 -1QQA - PURR_ECOLI -
1 PsiBlast_PDB 90.1830%-100 - C3 -1JH9 - PURR_ECOLI -
9 PsiBlast_PDB 90.0630%-103 - C3 -1WET - PURR_ECOLI -
16 PsiBlast_PDB 89.9630%-103 - C3 -2PUG - PURR_ECOLI -
14 PsiBlast_PDB 89.8030%-103 - C3 -2PUE - PURR_ECOLI -
12 PsiBlast_PDB 89.7830%-104 - C3 -1QPZ - PURR_ECOLI -
8 PsiBlast_PDB 89.7530% -99 - C3 -1BDI - PURR_ECOLI -
3 PsiBlast_PDB 89.7530%-102 - C3 -1BDH - PURR_ECOLI -
15 PsiBlast_PDB 89.6230%-100 - C3 -2PUF - PURR_ECOLI -
43 HHSearch 89.5731% -99 * C3 *1QPZ - PURR_ECOLI -
17 PsiBlast_PDB 89.5730% -97 - C3 -2PUA - PURR_ECOLI -
20 PsiBlast_PDB 89.4730% -99 - C3 -2PUD - PURR_ECOLI -
18 PsiBlast_PDB 89.0830%-102 - C3 -2PUB - PURR_ECOLI -
2 PsiBlast_PDB 88.9430%-103 - C3 -1JFT - PURR_ECOLI -
19 PsiBlast_PDB 88.9330%-100 - C3 -2PUC - PURR_ECOLI -
66 Fugue 40.6648% -57 - C3 -1QPZ 3.8 PURR_ECOLI