@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0742: (2015-12-02 )
MNNSAANIRSFELALLFLLVFVAVYFVYLAVRDFKMSKNIRLLNWKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQEKNRLASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDMLGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLVAVSHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVTYEEWEDVED

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




AN2_B_4(4U7O)
?
[Raw transfer]




ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]




ADP_A_3(4JAS)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




ADP_A_7(3DGE)
?
[Raw transfer]




ADP_A_8(4JAV)
?
[Raw transfer]




ADP_B_13(4JAV)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_B_8(3DGE)
?
[Raw transfer]




ADP_A_2(4JAU)
?
[Raw transfer]




61 Fugue 84.2275% -80 - C2 -4I5S - ? -
1 PsiBlast_PDB 84.0474% -79 * C2 *4I5S - ? -
3 PsiBlast_PDB 71.9956% -98 - C1 -4U7O 9.0 ?
2 PsiBlast_PDB 66.2856%-102 - C1 -4U7N - ? -
21 PsiBlast_CBE 63.7856% -82 - C1 -4U7O 9.5 ?
7 PsiBlast_PDB 61.9534% -89 - C1 -4JAV 9.0 ?
5 PsiBlast_PDB 61.9034% -91 - C1 -2C2A 7.6 ?
9 PsiBlast_PDB 60.7233% -98 - C1 -4JAU 6.8 ?
4 PsiBlast_PDB 59.5649% -95 - C1 -3SL2 7.7
22 PsiBlast_CBE 59.4234% -90 - C1 -4JAV 8.0 ?
8 PsiBlast_PDB 58.1333% -89 - C1 -4JAS 9.2 ?
39 HHSearch 56.7724% -81 - C1 -3A0R - ? -
19 PsiBlast_PDB 55.7823% -73 - C1 -3A0R - ? -
6 PsiBlast_PDB 55.2634% -82 - C1 -3DGE 7.0 ?
23 PsiBlast_CBE 55.0534% -81 - C1 -3DGE 8.0 ?
49 HHSearch 54.7026% -89 - C1 -1ID0 - -
10 PsiBlast_PDB 54.5533% -70 - C1 -4Q20 - DIVL_CAUCR -
46 HHSearch 53.2525% -92 * C1 *3A0Y - ? -
13 PsiBlast_PDB 52.8228% -67 - C1 -4BIX - CPXA_ECOLI -
48 HHSearch 52.4756% -81 - C1 -3SL2 7.7