@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1621: (2015-12-09 )
MTIYNFSAGPAVLPKPVLVKAQSELLNYQGSSMSVLEVSHRSKEFDDIIKGAERYLRDLMGIPDNYKVIFLQGGASLQFSMIPLNIARGRKAYYHVAGSWGKKAYTEAVKLSKTIPFEPILLASSEESVYDYIPEFDEKEIDPEAAYVHVTTNNTIEGTSLYDIPKTNGVPVIADMSSNILAVKYKVEDFAMIYAGAQKNIGPAGVTVVIIREDMINEEPTLSSMLDYKIQSDASSLYNTPPAYSIYIAKLVFEWVKSLGGVDAMEKANREKSGLLYDYIDSSEFYSNPVRDKKSRSLCNIPFITINKDLDEKFVKEATERGFKNIKGHRSVGGMRASLYNAFPKQGVIELIDFMKTFEAENA

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_B_9(4AZJ)
SERC_BACAO
[Raw transfer]




PLP_A_4(4AZJ)
SERC_BACAO
[Raw transfer]




PLP_B_4(3QBO)
?
[Raw transfer]




PLP_B_11(2BIA)
SERC_BACAO
[Raw transfer]




PLP_A_2(1W3U)
SERC_BACCI
[Raw transfer]




PLP_B_11(2BI2)
SERC_BACAO
[Raw transfer]




PLP_A_3(4AZK)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI2)
SERC_BACAO
[Raw transfer]




PLP_B_5(4AZK)
SERC_BACAO
[Raw transfer]




PLP_A_3(2C0R)
SERC_BACCI
[Raw transfer]




PLP_A_10(1W23)
SERC_BACAO
[Raw transfer]




PLP_B_4(2C0R)
SERC_BACCI
[Raw transfer]




PLP_A_3(2C0R)
SERC_BACCI
[Raw transfer]




PLP_A_3(1BT4)
SERC_BACCI
[Raw transfer]




PLP_B_11(2BI5)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI9)
SERC_BACAO
[Raw transfer]




PLP_A_10(1W23)
SERC_BACAO
[Raw transfer]




PLP_A_3(1BT4)
SERC_BACCI
[Raw transfer]




PLP_B_11(2BI3)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI9)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BIA)
SERC_BACAO
[Raw transfer]




PLP_B_18(1W23)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BIG)
SERC_BACAO
[Raw transfer]




PLP_A_4(3E77)
SERC_HUMAN
[Raw transfer]




PLP_A_3(2BI5)
SERC_BACAO
[Raw transfer]




PLP_A_4(3E77)
SERC_HUMAN
[Raw transfer]




PLP_A_3(2BI1)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BHX)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BHX)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI1)
SERC_BACAO
[Raw transfer]




PLP_A_3(3QBO)
?
[Raw transfer]




PLP_A_3(2BIE)
SERC_BACAO
[Raw transfer]




PLP_B_6(3E77)
SERC_HUMAN
[Raw transfer]




PLP_B_10(2BIE)
SERC_BACAO
[Raw transfer]




PLP_B_10(2BIG)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI3)
SERC_BACAO
[Raw transfer]




MES_A_4(3M5U)
SERC_CAMJE
[Raw transfer]




PLP_A_3(1BJO)
SERC_ECOLI
[Raw transfer]




25 PsiBlast_CBE 94.4646% -99 - C1 -2BIA 3.9 SERC_BACAO
22 PsiBlast_CBE 93.6246% -99 - C1 -2BIE 4.3 SERC_BACAO
30 PsiBlast_CBE 93.1546% -98 - C1 -2BI1 4.5 SERC_BACAO
21 PsiBlast_CBE 93.1446% -98 - C1 -2BIG 3.5 SERC_BACAO
12 PsiBlast_PDB 93.0046% -94 - C1 -4AZK 4.2 SERC_BACAO
29 PsiBlast_CBE 92.9946% -99 - C1 -2BI2 4.6 SERC_BACAO
32 PsiBlast_CBE 92.5646% -99 - C1 -1W23 3.8 SERC_BACAO
8 PsiBlast_PDB 92.4046% -97 - C1 -2BI5 4.9 SERC_BACAO
28 PsiBlast_CBE 92.2846% -98 - C1 -2BI3 4.6 SERC_BACAO
27 PsiBlast_CBE 92.2846% -99 - C1 -2BI5 4.8 SERC_BACAO
26 PsiBlast_CBE 91.9946% -98 - C1 -2BI9 4.9 SERC_BACAO
9 PsiBlast_PDB 91.9446% -96 - C1 -2BI9 4.8 SERC_BACAO
6 PsiBlast_PDB 91.7746% -96 - C1 -2BI2 4.6 SERC_BACAO
3 PsiBlast_PDB 91.7546% -97 - C1 -1W23 3.9 SERC_BACAO
34 PsiBlast_CBE 91.6445% -93 - C1 -3QBO 4.5 ?
10 PsiBlast_PDB 91.6146% -97 - C1 -2BIA 4.7 SERC_BACAO
31 PsiBlast_CBE 91.6046% -99 - C1 -2BHX 4.5 SERC_BACAO
1 PsiBlast_PDB 91.2846% -95 - C1 -2BIE 4.3 SERC_BACAO
7 PsiBlast_PDB 91.2046% -95 - C1 -2BI3 5.1 SERC_BACAO
5 PsiBlast_PDB 91.1946% -96 - C1 -2BI1 4.4 SERC_BACAO
4 PsiBlast_PDB 91.1046% -95 - C1 -2BHX 4.3 SERC_BACAO
38 HHSearch 91.0647% -97 - C1 -1W23 3.9 SERC_BACAO
23 PsiBlast_CBE 91.0646% -95 - C1 -4AZK 4.2 SERC_BACAO
2 PsiBlast_PDB 90.5946% -95 - C1 -2BIG 4.6 SERC_BACAO
17 PsiBlast_PDB 89.9145% -93 - C1 -3QBO 3.9 ?
41 HHSearch 89.8946% -88 - C1 -3E77 3.6 SERC_HUMAN
11 PsiBlast_PDB 89.8546% -93 - C1 -4AZJ 4.5 SERC_BACAO
24 PsiBlast_CBE 89.7246% -95 - C1 -4AZJ 4.3 SERC_BACAO
37 PsiBlast_CBE 89.6845% -97 - C1 -3E77 3.6 SERC_HUMAN
36 PsiBlast_CBE 89.2645% -99 - C1 -3E77 3.9 SERC_HUMAN
15 PsiBlast_PDB 87.1045% -92 - C1 -1W3U 4.3 SERC_BACCI
33 PsiBlast_CBE 85.9345% -91 - C1 -2C0R 4.8 SERC_BACCI
18 PsiBlast_PDB 85.2745% -92 - C1 -1BJO 4.7 SERC_ECOLI
60 Fugue 84.8944% -91 * C1 *1BT4 3.3 SERC_BACCI
14 PsiBlast_PDB 84.5345% -92 - C1 -1BT4 3.3 SERC_BACCI
16 PsiBlast_PDB 82.7645% -90 - C1 -2C0R 4.6 SERC_BACCI
40 HHSearch 81.9943% -88 - C1 -2C0R 4.6 SERC_BACCI
39 HHSearch 81.1342% -86 - C1 -3M5U 2.1 SERC_CAMJE