@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2085: (2015-12-13 )
MKNLRNRSFLTLLDFSTAEVEFLLKLSEDLKRAKYAGIEQQKLVGKNIALIFEKDSTRTRCAFEVAAHDQGAHVTYLGPTGSQMGKKETSKDTARVLGGMYDGIEYRGFSQETVETLAEFSGVPVWNGLTDADHPTQVLADFLTAKECLHKPYKDIRFTYVGDGRNNVANALMIGASIVGMTYHLVCPKELEPDPELLSKCQEIAKTTGASIEITADIAEGVRDSDVLYTDVWVSMGEPDEVWKERIALLEPYRITQEMLNMTENPNVIFEHCLPSFHNIDTKVGYDIYEKYGLKEMEVSDEVFEGPHSVVFQEAENRMHTIKAVMVATLGD

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




CP_B_18(4H31)
OTC_VIBVU
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]




1 PsiBlast_PDB 97.4265% -98 - C8 -3UPD - OTC_VIBVU -
27 PsiBlast_CBE 97.1365% -95 - C8 -4JFR - OTC_VIBVU -
22 PsiBlast_CBE 96.9265% -95 - C8 -4KWT - OTC_VIBVU -
21 PsiBlast_CBE 96.8565% -98 - C8 -4KWT - OTC_VIBVU -
25 PsiBlast_CBE 96.5165% -95 - C8 -4JHX - OTC_VIBVU -
4 PsiBlast_PDB 96.1665% -91 - C8 -4JHX 2.8 OTC_VIBVU
23 PsiBlast_CBE 95.5665% -91 - C8 -4JQO 3.7 OTC_VIBVU
3 PsiBlast_PDB 95.5065% -92 - C8 -4JFR 4.7 OTC_VIBVU
26 PsiBlast_CBE 95.4565% -96 - C8 -4JHX - OTC_VIBVU -
5 PsiBlast_PDB 95.4565% -92 - C8 -4JQO 3.8 OTC_VIBVU
29 PsiBlast_CBE 95.4265% -91 - C8 -4H31 - OTC_VIBVU -
28 PsiBlast_CBE 95.3365% -92 - C8 -4JFR 4.6 OTC_VIBVU
2 PsiBlast_PDB 95.3265% -91 - C8 -4H31 5.0 OTC_VIBVU
24 PsiBlast_CBE 94.9965% -92 - C8 -4JQO 3.7 OTC_VIBVU
30 PsiBlast_CBE 94.7065% -90 - C8 -4H31 5.0 OTC_VIBVU
34 PsiBlast_CBE 91.8457% -92 - C8 -2OTC - OTC1_ECOLI -
40 PsiBlast_CBE 91.4757% -92 - C8 -2OTC - OTC1_ECOLI -
102 HHSearch 91.4656% -89 - C8 -1DXH - OTCC_PSEAE -
6 PsiBlast_PDB 91.2456% -90 - C8 -1DXH - OTCC_PSEAE -
122 Fugue 91.0556% -90 - C8 -2OTC - OTC1_ECOLI -
32 PsiBlast_CBE 90.4957% -88 - C8 -1DUV 6.8 OTC1_ECOLI
8 PsiBlast_PDB 90.0657% -88 - C8 -1DUV 6.9 OTC1_ECOLI
31 PsiBlast_CBE 89.7157% -86 - C8 -1DUV 6.7 OTC1_ECOLI
48 PsiBlast_CBE 77.6437% -83 - C8 -1C9Y 4.7 OTC_HUMAN
105 HHSearch 77.5939% -85 - C8 -1OTH 7.5 OTC_HUMAN
47 PsiBlast_CBE 77.2337% -85 - C8 -1EP9 4.9 OTC_HUMAN
45 PsiBlast_CBE 77.1137% -88 - C8 -1FVO 4.0 OTC_HUMAN
20 PsiBlast_PDB 76.7337% -83 - C8 -1OTH 7.5 OTC_HUMAN
46 PsiBlast_CBE 76.4437% -81 - C8 -1FVO 3.9 OTC_HUMAN
43 PsiBlast_CBE 76.1138% -89 - C8 -4NF2 5.0 OTC_BACAN
19 PsiBlast_PDB 76.0438% -87 - C8 -4NF2 4.9 OTC_BACAN
73 PsiBlast_CBE 75.7433% -81 - C8 -4A8T 6.0 PTC_ENTFA
44 PsiBlast_CBE 75.4938% -85 - C8 -4NF2 4.9 OTC_BACAN
80 PsiBlast_CBE 74.5033% -80 - C8 -4A8H 6.2 PTC_ENTFA
55 PsiBlast_CBE 74.0235% -85 - C8 -2I6U 4.3 OTC_MYCTU
81 PsiBlast_CBE 73.9033% -78 - C8 -4A8H 6.2 PTC_ENTFA
56 PsiBlast_CBE 72.5735% -82 - C8 -2I6U 4.4 OTC_MYCTU
57 PsiBlast_CBE 71.3035% -83 - C8 -2I6U 4.1 OTC_MYCTU
107 HHSearch 70.4337% -77 - C8 -2I6U 4.1 OTC_MYCTU