@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2109: (2015-12-13 )
MGIEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKGEVIVDDFSIKAGDKNKEIKFIRQKVGLVFQFPESQLFEETVLKDVAFGPQNFGISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDPKGRKELMTLFKNLHKKGMTIVLVTHLMDDVADYADYVYVLEAGKVTLSGQPKQIFQEVELLESKQLGVPKITKFAQRLSHKGLNLPSLPITINEFVEAIKHG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




1 PsiBlast_PDB 94.2754%-108 - C1 -4HUQ - ECFA2_LACBA -
21 PsiBlast_CBE 93.4751%-107 - C1 -4MKI 3.0 ECFA2_CALS4
3 PsiBlast_PDB 92.0451%-105 - C1 -4MKI - ECFA2_CALS4 -
2 PsiBlast_PDB 89.4454%-101 - C1 -4HZU - ECFA2_LACBA -
4 PsiBlast_PDB 76.5140%-116 - C1 -3GFO - ECFA3_CLOP1 -
46 PsiBlast_CBE 75.5233%-109 - C1 -3TUI - METN_ECOLI -
43 PsiBlast_CBE 75.4733%-107 - C1 -3TUZ - METN_ECOLI -
47 PsiBlast_CBE 75.4533%-107 - C1 -3TUI - METN_ECOLI -
40 PsiBlast_CBE 75.4433%-110 * C1 *3TUZ - METN_ECOLI -
107 HHSearch 74.3541%-114 - C1 -3GFO - ECFA3_CLOP1 -
44 PsiBlast_CBE 74.2233%-111 - C1 -3TUI - METN_ECOLI -
42 PsiBlast_CBE 73.8933%-107 - C1 -3TUZ - METN_ECOLI -
22 PsiBlast_CBE 73.8538%-105 - C1 -4HLU - ECFA2_THEMA -
6 PsiBlast_PDB 73.6038%-104 - C1 -4HLU - ECFA2_THEMA -
45 PsiBlast_CBE 72.7433%-100 - C1 -3TUI - METN_ECOLI -
105 HHSearch 72.6535%-110 - C1 -3TUI - METN_ECOLI -
41 PsiBlast_CBE 72.3133%-106 - C1 -3TUZ - METN_ECOLI -
119 Fugue 68.1229%-100 - C1 -3TUZ - METN_ECOLI -
116 HHSearch 67.7835%-114 - C1 -1B0U - HISP_SALTY -
50 PsiBlast_CBE 67.6636%-113 - C1 -1L2T - Y796_METJA -