@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu15550: (2016-06-24 )
MKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIKS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




GOL_A_3(3VE9)
?
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




PEG_A_5(3UWQ)
PYRF_VIBCH
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




PGE_A_3(3N3M)
?
[Raw transfer]




22 PsiBlast_CBE 88.40100%-108 - C2 -1DBT 7.3 PYRF_BACSU
21 PsiBlast_CBE 87.35100%-104 - C2 -1DBT 7.4 PYRF_BACSU
43 HHSearch 84.72100%-100 - C2 -1DBT 6.9 PYRF_BACSU
32 Fugue 84.72100%-100 - C2 -1DBT 6.9 PYRF_BACSU
1 PsiBlast_PDB 84.72100%-100 - C2 -1DBT 6.9 PYRF_BACSU
33 Fugue 78.1797% -97 - C2 -1DBT 6.9 PYRF_BACSU
23 PsiBlast_CBE 72.9960%-121 - C2 -2YYU 3.5 PYRF_GEOKA
51 HHSearch 71.8959%-119 - C2 -2YYU 4.1 PYRF_GEOKA
3 PsiBlast_PDB 71.4960%-119 - C2 -2YYU - PYRF_GEOKA -
2 PsiBlast_PDB 71.4960%-134 - C2 -2YYT - PYRF_GEOKA -
4 PsiBlast_PDB 67.6445%-128 - C2 -3TFX - PYRF_LACAC -
52 HHSearch 67.4737%-143 * C2 *3RU6 - PYRF_CAMJE -
46 HHSearch 66.5044%-127 - C2 -3TFX - PYRF_LACAC -
57 HHSearch 65.6339%-154 - C- -3TR2 - PYRF_COXBU -
9 PsiBlast_PDB 65.1839%-164 - C- -3TR2 - PYRF_COXBU -
26 PsiBlast_CBE 64.4041%-127 - C2 -1EIX 6.0 PYRF_ECOLI
59 HHSearch 64.0041%-122 - C2 -3LDV - PYRF_VIBCH -
28 PsiBlast_CBE 63.9841%-125 - C2 -1EIX 6.3 PYRF_ECOLI
27 PsiBlast_CBE 63.8441%-125 - C2 -1EIX 6.3 PYRF_ECOLI
7 PsiBlast_PDB 62.6941%-122 - C2 -1EIX 6.4 PYRF_ECOLI
6 PsiBlast_PDB 62.6944%-136 - C2 -3UWQ 6.0 PYRF_VIBCH
42 HHSearch 61.7239%-114 - C2 -1EIX 6.4 PYRF_ECOLI
24 PsiBlast_CBE 60.9744%-130 - C2 -3UWQ 2.6 PYRF_VIBCH