@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu16400: (2016-06-25 )
MKIKKFTAASMQEAALLIRKELGNEAVILNSKKIKKRKWFGLVNKPAVEVIAVLDQDFLEKKTPQKAAEPKQTLKTPVSSPKIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_23(3SYN)
FLHF_BACSU
[Raw transfer]




GTP_A_3(2PX3)
FLHF_BACSU
[Raw transfer]




GCP_A_5(1RJ9)
FTSY_THEAQ
[Raw transfer]




CHAIN_H_8(3SYN)
FLHF_BACSU
[Raw transfer]

-

CHAIN_H_8(3SYN)
FLHF_BACSU
[Raw transfer]

-

EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GDP_B_17(3SYN)
FLHF_BACSU
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




CHAIN_F_6(3SYN)
FLHF_BACSU
[Raw transfer]

-

CHAIN_E_5(3SYN)
FLHF_BACSU
[Raw transfer]

-

OXY_A_5(1LS1)
SRP54_THEAQ
[Raw transfer]




3 PsiBlast_PDB 95.69100%-129 - C9 -3SYN 5.1 FLHF_BACSU
22 PsiBlast_CBE 94.76100%-126 - C9 -3SYN 7.9 FLHF_BACSU
23 PsiBlast_CBE 94.74100%-127 - C9 -3SYN 5.6 FLHF_BACSU
27 PsiBlast_CBE 94.73100%-133 - C9 -2PX0 - FLHF_BACSU -
21 PsiBlast_CBE 94.71100%-128 - C9 -3SYN 5.1 FLHF_BACSU
1 PsiBlast_PDB 94.43100%-125 - C9 -2PX0 - FLHF_BACSU -
44 HHSearch 94.37100%-125 - C9 -2PX0 - FLHF_BACSU -
2 PsiBlast_PDB 94.27100%-130 - C9 -2PX3 7.1 FLHF_BACSU
30 PsiBlast_CBE 94.15100%-126 - C9 -2PX0 - FLHF_BACSU -
25 PsiBlast_CBE 93.01100%-128 - C9 -2PX0 - FLHF_BACSU -
24 PsiBlast_CBE 92.45100%-130 - C9 -2PX0 - FLHF_BACSU -
26 PsiBlast_CBE 92.16100%-131 - C9 -2PX0 - FLHF_BACSU -
29 PsiBlast_CBE 91.92100%-122 - C9 -2PX0 - FLHF_BACSU -
28 PsiBlast_CBE 91.30100%-129 - C9 -2PX0 - FLHF_BACSU -
49 HHSearch 66.7524%-125 - C9 -3B9Q - CFTSY_ARATH -
47 HHSearch 64.3624%-122 - C9 -2OG2 - CFTSY_ARATH -
45 HHSearch 64.1622%-113 - C9 -4C7O - SRP54_ECOLI -
54 HHSearch 63.2423%-123 - C9 -2YHS 2.0 FTSY_ECOLI
56 HHSearch 61.4328%-113 - C9 -1VMA - ? -
52 HHSearch 60.1422%-122 - C9 -3E70 - ? -
59 HHSearch 57.9230%-126 * C9 *1RJ9 8.6 FTSY_THEAQ
32 PsiBlast_CBE 55.1531%-123 - C9 -4C7O 3.8 SRP54_ECOLI
7 PsiBlast_PDB 54.7331%-126 - C9 -4C7O 4.2 SRP54_ECOLI