@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu27610: (2016-07-13 )
MDLKQYVTIVPDYPKEGVQFKDITTLMDKGDVYRYATDQIVEYAKEKQIDLVVGPEARGFIIGCPVAYALGVGFAPVRKEGKLPREVIKVDYGLEYGKDVLTIHKDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGVVAGIAFLIELSYLDGRNKLEDYDILTLMKY

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]




AMP_B_5(1ZN8)
APT_HUMAN
[Raw transfer]




AMP_A_5(4M0K)
?
[Raw transfer]




AMP_C_9(4M0K)
?
[Raw transfer]




AMP_B_3(4X45)
APT_HUMAN
[Raw transfer]




AMP_A_5(4M0K)
?
[Raw transfer]




AMP_B_7(4M0K)
?
[Raw transfer]




AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]




AMP_A_3(1ORE)
APT_HUMAN
[Raw transfer]




AMP_D_11(4M0K)
?
[Raw transfer]




AMP_A_2(4X44)
APT_HUMAN
[Raw transfer]




PRP_A_6(1ZN7)
APT_HUMAN
[Raw transfer]




9DA_A_3(1L1R)
?
[Raw transfer]




9DA_I_9(1L1Q)
?
[Raw transfer]




PRP_A_4(1L1R)
?
[Raw transfer]




PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]




ADE_B_12(1ZN7)
APT_HUMAN
[Raw transfer]




ADE_A_8(1ZN7)
APT_HUMAN
[Raw transfer]




9DA_I_9(1L1Q)
?
[Raw transfer]




81 HHSearch 83.4750%-150 - C3 -4M0K 5.5 ?
79 HHSearch 82.3553%-164 - C3 -4LZA - APT_THEP3 -
1 PsiBlast_PDB 82.2153%-164 - C3 -4LZA - APT_THEP3 -
3 PsiBlast_PDB 79.9155%-140 - C3 -2DY0 - APT_ECOLI -
4 PsiBlast_PDB 78.9352%-153 - C3 -4M0K 5.5 ?
21 PsiBlast_CBE 78.7552%-158 - C3 -4M0K 5.7 ?
80 HHSearch 78.5853%-142 * C3 *2DY0 - APT_ECOLI -
2 PsiBlast_PDB 78.3552%-152 - C3 -4MB6 - APT_YERPS -
22 PsiBlast_CBE 78.2952%-151 - C3 -4M0K 5.3 ?
23 PsiBlast_CBE 78.0652%-153 - C3 -4M0K 5.8 ?
69 Fugue 66.7341% -32 - C3 -1G2Q - APT1_YEAST -
9 PsiBlast_PDB 65.7739% -41 - C3 -1ZN9 - APT_HUMAN -
82 HHSearch 65.7240% -41 - C3 -4X45 - APT_HUMAN -
83 HHSearch 65.2841% -15 - C3 -1G2Q - APT1_YEAST -
5 PsiBlast_PDB 65.1939% -35 - C3 -4X44 6.7 APT_HUMAN
10 PsiBlast_PDB 65.1539% -41 - C3 -4X45 - APT_HUMAN -
12 PsiBlast_PDB 65.0940% -19 - C3 -1G2P - APT1_YEAST -
25 PsiBlast_CBE 64.9739% -45 - C3 -1ZN8 6.8 APT_HUMAN
8 PsiBlast_PDB 64.8139% -39 - C3 -1ZN8 7.3 APT_HUMAN
11 PsiBlast_PDB 64.7940% -14 - C3 -1G2Q - APT1_YEAST -
7 PsiBlast_PDB 64.6339% -36 - C3 -1ZN7 4.9 APT_HUMAN
6 PsiBlast_PDB 64.5239% -33 - C3 -1ORE 6.8 APT_HUMAN
27 PsiBlast_CBE 64.5139% -43 - C3 -4X45 6.6 APT_HUMAN
14 PsiBlast_PDB 64.2138% -98 - C3 -1L1R 4.6 ?
24 PsiBlast_CBE 63.8939% -35 - C3 -1ZN9 6.7 APT_HUMAN
26 PsiBlast_CBE 63.8539% -36 - C3 -1ZN7 4.5 APT_HUMAN
84 HHSearch 63.7235% -90 - C3 -1L1Q 3.1 ?
13 PsiBlast_PDB 63.6338% -92 - C3 -1L1Q 3.1 ?