@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu33000: (2016-07-25 )
MDYRRDGQNDQHQTEPSHTEQQNTENQKLIGHSEQELLDAPVSYEAGRQETASALEMEKQETAVKKEKKRRAAWLSPILGGIIGGGLMLGIAPYLPSDQNQATETASANKQVQSDNFTTAPITNASNIADMVEDLEPTIVGISNIQTSQNNTFGTGGGSSSESESGTGSGVIFKKDSDKAYIITNNHVVEGANKLTVTLYNGETETAKLVGSDTITDLAVLEISGKNVKKVASFGDSSQLRTGEKVIAIGNPLGQQFSGTVTQGIISGLNRTIDVDTTQGTVEMNVLQTDAAINPGNSGGPLINASGQVIGINSLKVSESGVESLGFAIPSNDVEPIVDQLLQNGKVDRPFLGVQMIDMSQVPETYQENTLGLFGDQLGKGVYVKEVQANSPAEKAGIKSEDVIVKLNGKDVESSADIRQILYKDLKVGDKTTIQVLRKGKTKTLNATLTKQTESSSS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
BOG_B_9(3TJO)
HTRA1_HUMAN
[Raw transfer]



DFP_A_2(3MH6)
DEGP_ECOLI
[Raw transfer]



CHAIN_F_6(2Z9I)
?
[Raw transfer]
-
CHAIN_H_8(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3OU0)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_G_7(3PV3)
?
[Raw transfer]
-
CHAIN_F_6(3PV3)
?
[Raw transfer]
-
CHAIN_F_6(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_B_2(3MH7)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_D_4(2Z9I)
?
[Raw transfer]
-
CHAIN_E_5(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3NZI)
HTRA1_HUMAN
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
123 Fugue 81.2839% -90 - C- -3PV2 - ? -
22 PsiBlast_CBE 65.3037% 11 - C3 -3QO6 Error DEGP1_ARATH
107 HHSearch 65.2241% 11 - C3 -3QO6 4.0 DEGP1_ARATH
110 HHSearch 64.3936% - - C3 -4A8C - DEGQ_ECOLI -
21 PsiBlast_CBE 63.8937% 12 - C3 -3QO6 3.5 DEGP1_ARATH
1 PsiBlast_PDB 63.5437% 10 - C3 -3QO6 4.0 DEGP1_ARATH
111 HHSearch 63.0532% -61 - C1 -1LCY - HTRA2_HUMAN -
14 PsiBlast_PDB 60.7936% - - C3 -4A9G - DEGQ_ECOLI -
102 HHSearch 60.3136% -19 - C3 -3STJ 4.1 DEGQ_ECOLI
101 HHSearch 59.4334% -24 - C3 -1TE0 - DEGS_ECOLI -
13 PsiBlast_PDB 59.2336% - - C3 -4A8C - DEGQ_ECOLI -
24 PsiBlast_CBE 58.3441% -20 - C3 -3PV3 2.8 ?
25 PsiBlast_CBE 58.2741% -25 - C3 -3PV3 3.8 ?
23 PsiBlast_CBE 58.0941% -26 - C3 -3PV3 4.0 ?
5 PsiBlast_PDB 57.7939% -7 - C3 -2ZLE - DEGP_ECOLI -
4 PsiBlast_PDB 57.2741% -14 - C3 -3PV3 4.1 ?
105 HHSearch 56.6636% 30 - C3 -4IC6 - DEGP8_ARATH -
3 PsiBlast_PDB 56.1641% -24 - C- -3PV2 - ? -
2 PsiBlast_PDB 56.0536% 32 - C3 -4YNN - ? -
12 PsiBlast_PDB 55.9539% 7 - C3 -3OU0 2.8 DEGP_ECOLI
10 PsiBlast_PDB 54.2339% 10 - C3 -3MH7 3.6 DEGP_ECOLI
6 PsiBlast_PDB 52.6139% 15 - C3 -3MH6 2.6 DEGP_ECOLI
35 PsiBlast_CBE 52.0336% 16 - C3 -3STJ Error DEGQ_ECOLI
9 PsiBlast_PDB 51.2736% 16 - C3 -3STJ 4.9 DEGQ_ECOLI
16 PsiBlast_PDB 50.4932% -69 - C3 -3NZI 6.5 HTRA1_HUMAN
50 PsiBlast_CBE 48.3939% -72 - C3 -3TJO 4.2 HTRA1_HUMAN
39 PsiBlast_CBE 41.9543% 10 - C3 -2Z9I 2.9 ?
37 PsiBlast_CBE 40.7643% 17 - C3 -2Z9I 2.9 ?