@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu40110: (2016-08-06 )
MGNMPKDFLWGGALAAHQFEGGWNQGGKGPSVVDVMTAGAHGVPRKITDTIEENEFYPNHEAIDFYHRYKEDIALFAEMGLKCLRTSIGWSRIFPKGDEAEPNEAGLQFYDDVFDELLKHGIEPVITLSHFEMPLHLAREYGGFRNRKVVDFFVNFAEACFTRYKDKVKYWMTFNEINNQMDVNNPLFLWTNSGVVVGENENAKEVMYQTAHHELVASALAVAKGKDINPEFQIGAMVSHVPIYPFSSNPEDVMLAEEEMRQRYFFPDVQVRGYYPSYALKEFEREGYNITFEDGDDEILRNGTVDYLGFSYYMSTTVKSDVKNDNTGDIVNGGLPNGVENPYITSSDWGWAIDPTGLRYTLNRFYDRYQIPLFIVENGFGAVDTLEEDGKVHDPERIQYLKSHIEALKKAVTYDGVDLIGYTPWGIIDIVSFTTGEMKKRYGMIYVDRDNEGNGSMKRYKKDSFEWYKNVIQTNGEEL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6GB_B_5(4GPN)
?
[Raw transfer]




BG6_A_3(4F66)
?
[Raw transfer]




BG6_A_3(4F66)
?
[Raw transfer]




P53_A_2(4F79)
?
[Raw transfer]




BG6_B_7(4F66)
?
[Raw transfer]




6GB_A_3(4GPN)
?
[Raw transfer]




1FT_B_3(4IPN)
?
[Raw transfer]




1FT_E_4(4IPN)
?
[Raw transfer]




BGP_B_4(4PBG)
LACG_LACLL
[Raw transfer]




BGP_A_3(4PBG)
LACG_LACLL
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




22 PsiBlast_CBE 98.5665% -88 - C2 -2XHY - BGLA_ECOLI -
1 PsiBlast_PDB 97.4265% -87 - C2 -2XHY - BGLA_ECOLI -
21 PsiBlast_CBE 97.1765% -91 - C2 -2XHY - BGLA_ECOLI -
23 PsiBlast_CBE 96.9565% -87 - C2 -2XHY - BGLA_ECOLI -
25 PsiBlast_CBE 94.4360% -91 - C2 -4GPN 6.6 ?
5 PsiBlast_PDB 93.8359% -90 - C2 -3PN8 - ? -
3 PsiBlast_PDB 93.5060% -90 - C2 -4F79 6.0 ?
24 PsiBlast_CBE 93.2061% -88 - C2 -4F66 5.4 ?
2 PsiBlast_PDB 92.5561% -88 - C2 -4F66 6.0 ?
4 PsiBlast_PDB 92.1360% -88 - C2 -4GPN 5.1 ?
6 PsiBlast_PDB 91.7755% -94 - C2 -3QOM 3.1 ?
7 PsiBlast_PDB 91.0655% -94 - C2 -4GZE - ? -
113 HHSearch 87.7864% -40 - C2 -2XHY - BGLA_ECOLI -
9 PsiBlast_PDB 84.6551% -68 - C2 -4IPN 4.0 ?
26 PsiBlast_CBE 84.4451% -63 - C2 -4IPN 3.1 ?
8 PsiBlast_PDB 83.9551% -64 - C2 -4IPL 2.9 ?
104 HHSearch 80.7459% -22 - C2 -3QOM 2.6 ?
115 HHSearch 80.0154% -29 - C2 -4IPL 2.9 ?
107 HHSearch 79.4361% -18 - C2 -4F66 6.0 ?
39 PsiBlast_CBE 71.9133% -29 - C2 -4PTV - ? -
35 PsiBlast_CBE 63.6933% -8 - C2 -4PBG 4.7 LACG_LACLL
18 PsiBlast_PDB 62.0333% -10 - C2 -4PBG 4.9 LACG_LACLL