@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0860: (2016-04-26 )
MPDNTIQWDKDADGIVTLTMDDPSGSTNVMNEAYIESMGKAVDRLVAEKDSITGVVVASAKKTFFAGGDVKTMIQARPEDAGDVFNTVETIKRQLRTLETLGKPVVAAINGAALGGGLEIALACHHRIAADVKGSQLGLPEVTLGLLPGGGGVTRTVRMFGIQNAFVSVLAQGTRFKPAKAKEIGLVDELVATVEELVPAAKAWIKEELKANPDGAGVQPWDKKGYKMPGGTPSSPGLAAILPSFPSNLRKQLKGAPMPAPRAILAAAVEGAQVDFDTASRIESRYFASLVTGQVAKNMMQAFFFDLQAINAGGSRPEGIGKTPIKRIGVLGAGMMGAGIAYVSAKAGYEVVLKDVSLEAAAKGKGYSEKLEAKALERGRTTQERSDALLARITPTADAADFKGVDFVIEAVFENQELKHKVFGEIEDIVEPNAILGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEALARVFDYTLAIGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVEPASIEQAGSQAGYPAPPLQLSDELNLELMHKIAVATRKGVEDAGGTYQPHPAEAVVEKMIELGRSGRLKGAGFYEYADGKRSGLWPGLRETFKSGSSQPPLQDMIDRMLFAEALETQKCLDEGVLTSTADANIGSIMGIGFPPWTGGSAQFIVGYSGPAGTGKAAFVARARELAAAYGDRFLPPESLLS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_F_6(1M75)
HCDH_HUMAN
[Raw transfer]



NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]



NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]



NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]



NAD_B_6(4KUG)
?
[Raw transfer]



NAD_A_3(2HDH)
HCDH_HUMAN
[Raw transfer]



NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]



NAD_C_7(4KUG)
?
[Raw transfer]



NAD_D_8(4KUG)
?
[Raw transfer]



NAD_A_5(4KUG)
?
[Raw transfer]
1 PsiBlast_PDB 98.88100% -88 - C2 -4B3H - ? -
3 PsiBlast_PDB 98.46100% -88 - C2 -4B3J - ? -
21 PsiBlast_CBE 98.25100% -86 - C2 -4B3H - ? -
2 PsiBlast_PDB 98.03100% -88 - C2 -4B3I - ? -
105 HHSearch 97.0397% -87 - C2 -4B3H - ? -
126 Fugue 69.9632% -72 - C2 -1WDK - FADB_PSEFR -
25 PsiBlast_CBE 66.1033% -67 - C2 -1WDK - FADB_PSEFR -
22 PsiBlast_CBE 65.8633% -69 - C2 -2D3T - FADB_PSEFR -
24 PsiBlast_CBE 65.8233% -66 * C1 *1WDL - FADB_PSEFR -
23 PsiBlast_CBE 65.7533% -68 - C2 -1WDM - FADB_PSEFR -
5 PsiBlast_PDB 65.4533% -68 - C2 -1WDM - FADB_PSEFR -
108 HHSearch 65.1425% -76 - C2 -3ZWC - ECHP_RAT -
4 PsiBlast_PDB 64.7633% -65 - C2 -1WDL - FADB_PSEFR -
106 HHSearch 64.4229% -71 - C2 -2WTB - MFP2_ARATH -
6 PsiBlast_PDB 63.0529% -73 - C2 -2WTB - MFP2_ARATH -
10 PsiBlast_PDB 62.4028% -76 - C2 -3ZWC - ECHP_RAT -
8 PsiBlast_PDB 62.2128% -74 - C2 -3ZW9 - ECHP_RAT -
11 PsiBlast_PDB 62.1228% -78 - C2 -2X58 - ECHP_RAT -
12 PsiBlast_PDB 62.1128% -76 - C2 -3ZWB - ECHP_RAT -
7 PsiBlast_PDB 61.8828% -75 - C2 -3ZW8 - ECHP_RAT -
56 PsiBlast_CBE 44.9234% -70 - C2 -1F17 9.5 HCDH_HUMAN
53 PsiBlast_CBE 44.2234% -71 - C2 -3HDH 8.4 HCDH_PIG
54 PsiBlast_CBE 44.1134% -70 - C2 -1M75 9.7 HCDH_HUMAN
57 PsiBlast_CBE 43.7834% -72 - C2 -1F17 9.7 HCDH_HUMAN
52 PsiBlast_CBE 43.5834% -69 - C2 -3HDH 9.4 HCDH_PIG
16 PsiBlast_PDB 40.9335% -64 - C2 -4KUG 9.2 ?
42 PsiBlast_CBE 40.2135% -59 - C2 -4KUG 8.7 ?
44 PsiBlast_CBE 40.1535% -61 - C2 -4KUG 8.4 ?
43 PsiBlast_CBE 40.1535% -61 - C2 -4KUG 8.5 ?
130 Fugue 37.1736% -75 * C2 *2HDH 8.4 HCDH_HUMAN