@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2950: (2016-02-12 )
MIIKPRVRGFICVTTHPAGCEANVKQQIDYVEAKGPVVNGPKKVLVIGSSTGYGLAARITAAFGSGADTLGVFFERPGSESKPGTAGWYNSAAFEKFAHEKGLYARSINGDAFSDEVKRLTIETIKRDLGKVDLVVYSLAAPRRTHPKSGEVFSSTLKPIGKSVSFRGLDTDKEVIKDVVLEAASDQEVADTVAVMGGEDWQMWIDALLEADVLADGAKTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLGIRDKLAPLGGDARVSVLKAVVTQASSAIPMMPLYLSLLFKVMKEQGTHEGCIEQVDGLYRESLYGAEPRLDEEGRLRADYKELQPEVQSRVEELWDKVTNENLYELTDFAGYKSEFLNLFGFEVAGVDYEQDVNPDVQIANLIQA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_2(4BKR)
?
[Raw transfer]



NAI_A_2(4BKQ)
FABV_YERPE
[Raw transfer]



NAI_A_2(3ZU2)
FABV_YERPE
[Raw transfer]



NAD_A_2(4EUF)
FABV_CLOAB
[Raw transfer]



NAI_A_2(3ZU3)
FABV_YERPE
[Raw transfer]



NAI_A_2(3ZU4)
FABV_YERPE
[Raw transfer]



NAI_A_2(4EUE)
FABV_CLOAB
[Raw transfer]



NAI_A_2(3ZU5)
FABV_YERPE
[Raw transfer]



GOL_A_3(4BKR)
?
[Raw transfer]



GOL_A_4(4BKR)
?
[Raw transfer]



AEW_A_3(3ZU5)
FABV_YERPE
[Raw transfer]



MES_A_3(4BKO)
?
[Raw transfer]
5 PsiBlast_PDB 99.0179% -82 - C4 -3ZU5 11.6 FABV_YERPE
4 PsiBlast_PDB 98.8779% -78 - C4 -3ZU4 11.6 FABV_YERPE
1 PsiBlast_PDB 98.8279% -83 - C4 -4BKR 12.3 ?
3 PsiBlast_PDB 98.3679% -82 - C4 -3ZU3 12.1 FABV_YERPE
2 PsiBlast_PDB 98.3579% -82 - C4 -4BKQ 12.1 FABV_YERPE
6 PsiBlast_PDB 98.1879% -83 - C4 -3ZU2 12.1 FABV_YERPE
7 PsiBlast_PDB 95.4774% -81 - C4 -4BKO 2.8 ?
13 PsiBlast_PDB 87.1346% -78 - C4 -4EUE 12.2 FABV_CLOAB
14 PsiBlast_PDB 86.6946% -80 - C4 -4EUH - FABV_CLOAB -
11 PsiBlast_PDB 85.6147% -76 - C4 -4FBG - FABV_TREDE -
9 PsiBlast_PDB 84.7548% -72 - C4 -4GGO - FABV_TREDE -
12 PsiBlast_PDB 83.8646% -76 - C4 -4EUF 10.8 FABV_CLOAB
8 PsiBlast_PDB 74.1859% 1 - C4 -3S8M - FABV_XANOM -
51 Fugue 73.2258% -0 - C4 -3S8M - FABV_XANOM -
26 HHSearch 73.0058% 4 - C4 -3S8M - FABV_XANOM -
10 PsiBlast_PDB 67.4747% -7 - C4 -4GGP - FABV_TREDE -
37 HHSearch 49.4916% -39 - C4 -1GEE - DHG_BACME -
35 HHSearch 49.3318% -53 - C4 -3ICC - ? -
42 HHSearch 48.9515% -43 - C4 -3GAF - ? -
29 HHSearch 47.9421% -40 - C4 -3PXX - ? -