@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3507: (2016-02-17 )
MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLSRHA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_9(3LF2)
?
[Raw transfer]




NAP_A_5(3LF2)
?
[Raw transfer]




NAP_A_5(3LF2)
?
[Raw transfer]




GOL_D_12(3LF2)
?
[Raw transfer]




GOL_B_8(3LF2)
?
[Raw transfer]




EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_A_10(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




105 HHSearch 95.47100%-126 - C3 -3LF2 7.4 ?
2 PsiBlast_PDB 95.47100%-126 - C3 -3LF2 7.4 ?
22 PsiBlast_CBE 95.33100%-126 - C3 -3LF2 7.1 ?
23 PsiBlast_CBE 93.96100%-122 - C3 -3LF2 2.9 ?
21 PsiBlast_CBE 93.58100%-128 - C3 -3LF2 2.1 ?
24 PsiBlast_CBE 92.97100%-125 - C3 -3LF1 - ? -
1 PsiBlast_PDB 92.70100%-120 - C3 -3LF1 - ? -
40 PsiBlast_CBE 66.8334%-135 - C3 -3TZC - ? -
31 PsiBlast_CBE 65.9332%-108 - C3 -3AI2 - ? -
29 PsiBlast_CBE 65.5832%-107 - C3 -3AI2 - ? -
26 PsiBlast_CBE 65.4332%-108 - C3 -3AI2 - ? -
45 PsiBlast_CBE 65.3734%-134 - C3 -4WJZ - FABG_VIBCH -
3 PsiBlast_PDB 65.1432%-109 - C3 -3AI1 - ? -
25 PsiBlast_CBE 65.0432%-107 - C3 -3AI2 - ? -
4 PsiBlast_PDB 64.8032%-107 - C3 -3AI2 - ? -
30 PsiBlast_CBE 64.7332%-107 - C3 -3AI2 - ? -
28 PsiBlast_CBE 64.6132%-106 - C3 -3AI2 - ? -
32 PsiBlast_CBE 64.5932%-106 - C3 -3AI3 - ? -
44 PsiBlast_CBE 64.5634%-132 - C3 -4WJZ - FABG_VIBCH -
27 PsiBlast_CBE 64.4932%-108 - C3 -3AI2 - ? -
37 PsiBlast_CBE 63.3334%-109 - C3 -3RRO 2.6 FABG_VIBCH
7 PsiBlast_PDB 62.4834%-109 - C3 -3RRO 3.0 FABG_VIBCH