@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3584: (2016-02-18 )
MSQAHTPSAPLAEVYDVAVVGGGINGVGIAADAAGRGLSVFLCEQHDLAQHTSSASSKLIHGGLRYLEHYEFRLVREALAEREVLLAKAPHIVKPLRFVLPHRPHLRPAWMIRAGLFLYDHLGKREKLPASRGLRFTGSSPLKAEIRRGFEYSDCAVDDARLVVLNAISAREHGAHVHTRTRCVSARRSKGLWHLHLERSDGSLYSIRARALVNAAGPWVARFIQDDLKQKSPYGIRLIQGSHIIVPKLYEGEHAYILQNEDRRIVFAIPYLDRFTMIGTTDREYQGDPAKVAISEEETAYLLQVVNAHFKQQLAAADILHSFAGVRPLCDDESDEPSAITRDYTLSLSAGNGEPPLLSVFGGKLTTYRKLAESALTQLQPFFANLGPAWTAKAPLPGGEQMQSVEALTEQLANRYAWLDRELALRWARTYGTRVWRLLDGVNGEADLGEHLGGGLYAREVDYLCKHEWAQDAEDILWRRSKLGLFLSPSQQVRLGQYLQSEHPHRPRVHAA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_18(2R45)
GLPD_ECOLI
[Raw transfer]



FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_14(2R4E)
GLPD_ECOLI
[Raw transfer]



FAD_B_15(2R4E)
GLPD_ECOLI
[Raw transfer]



FAD_A_11(2R4J)
GLPD_ECOLI
[Raw transfer]



FAD_A_20(2R46)
GLPD_ECOLI
[Raw transfer]



FAD_B_16(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_2(3DA1)
?
[Raw transfer]



FAD_A_2(3DA1)
?
[Raw transfer]



EDO_A_20(2R45)
GLPD_ECOLI
[Raw transfer]



13P_A_16(2R4E)
GLPD_ECOLI
[Raw transfer]
2 PsiBlast_PDB 93.3760% -94 - C1 -2R45 11.0 GLPD_ECOLI
23 PsiBlast_CBE 92.4460% -94 - C1 -2R45 - GLPD_ECOLI -
3 PsiBlast_PDB 92.3760% -92 - C1 -2R46 13.3 GLPD_ECOLI
4 PsiBlast_PDB 92.1260% -93 - C1 -2R4E 11.9 GLPD_ECOLI
5 PsiBlast_PDB 91.9960% -93 - C1 -2R4J 12.6 GLPD_ECOLI
22 PsiBlast_CBE 91.9060% -92 - C1 -2R46 - GLPD_ECOLI -
1 PsiBlast_PDB 91.7760% -93 * C1 *2QCU 12.0 GLPD_ECOLI
24 PsiBlast_CBE 91.7560% -91 - C1 -2QCU 13.3 GLPD_ECOLI
21 PsiBlast_CBE 91.6660% -92 - C1 -2R4E 12.0 GLPD_ECOLI
49 HHSearch 67.9429% -75 - C1 -2RGH - ? -
7 PsiBlast_PDB 63.2030% -88 - C1 -2RGH - ? -
48 HHSearch 61.1330% -72 - C1 -3DA1 9.7 ?
8 PsiBlast_PDB 60.4027% -89 - C1 -2RGO - ? -
6 PsiBlast_PDB 57.3030% -72 - C1 -3DA1 7.9 ?
64 HHSearch 53.9217% -80 - C1 -2OLN - ? -
52 HHSearch 50.7518% -75 - C1 -3DME - ? -
50 HHSearch 50.7514% -82 - C1 -1RYI - GLOX_BACSU -
58 HHSearch 49.5614% -80 - C1 -2GF3 - MSOX_BACB0 -
51 HHSearch 49.4814% -78 - C1 -1Y56 - ? -
54 HHSearch 48.2215% -72 - C1 -3AXB - ? -