@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3861: (2016-02-21 )
MVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPPAELLKPVPRKH

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




8OD_B_7(3NBF)
?
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




ADP_A_4(3RRM)
DBP5_YEAST
[Raw transfer]




AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




3 PsiBlast_PDB 87.4938%-106 - C6 -4D25 5.8 ?
4 PsiBlast_PDB 87.2838%-105 - C6 -4D26 3.4 ?
104 HHSearch 86.0438%-118 - C6 -2I4I 4.4 DDX3X_HUMAN
2 PsiBlast_PDB 84.7938%-114 - C6 -4PXA 4.4 DDX3X_HUMAN
1 PsiBlast_PDB 84.6339%-126 - C6 -2I4I 5.9 DDX3X_HUMAN
6 PsiBlast_PDB 83.9339%-107 - C6 -4KBF 5.0 ?
24 PsiBlast_CBE 83.6939%-105 - C6 -4KBG - ? -
103 HHSearch 83.0536%-104 - C6 -2DB3 - VASA1_DROME -
37 PsiBlast_CBE 82.9633%-121 - C6 -3EWS 6.7 DD19B_HUMAN
25 PsiBlast_CBE 82.7939%-112 - C6 -4KBF - ? -
13 PsiBlast_PDB 82.6832%-117 - C6 -2J0S 6.9 IF4A3_HUMAN
36 PsiBlast_CBE 82.6333%-120 - C6 -3FHT 6.7 DD19B_HUMAN
26 PsiBlast_CBE 82.5732%-113 - C6 -3EX7 - IF4A3_HUMAN -
22 PsiBlast_CBE 82.3636%-107 - C6 -2DB3 - VASA1_DROME -
35 PsiBlast_CBE 82.2333%-119 - C6 -3FHT 6.8 DD19B_HUMAN
21 PsiBlast_CBE 82.1036%-107 - C6 -2DB3 - VASA1_DROME -
96 HHSearch 82.0834%-117 - C6 -3EIQ - IF4A1_HUMAN -
17 PsiBlast_PDB 81.9831%-119 - C6 -4CT4 - DDX6_HUMAN -
9 PsiBlast_PDB 81.9232%-111 - C6 -2HYI - IF4A3_HUMAN -
10 PsiBlast_PDB 81.8532%-112 - C6 -3EX7 - IF4A3_HUMAN -
38 PsiBlast_CBE 81.6731%-134 - C6 -2VSX 4.5 IF4A_YEAST
39 PsiBlast_CBE 81.2131%-133 - C6 -2VSX 5.0 IF4A_YEAST
32 PsiBlast_CBE 81.1133%-115 - C6 -3G0H 6.5 DD19B_HUMAN
100 HHSearch 80.6633%-109 - C6 -3FHT 6.7 DD19B_HUMAN
41 PsiBlast_CBE 80.3931%-131 - C6 -2VSO 5.2 IF4A_YEAST
40 PsiBlast_CBE 80.1231%-132 - C6 -2VSO 5.4 IF4A_YEAST
42 PsiBlast_CBE 79.8232%-117 - C6 -3RRN 4.7 DBP5_YEAST
19 PsiBlast_PDB 79.0733%-112 - C6 -4BRW 1.6 DHH1_YEAST
44 PsiBlast_CBE 78.4232%-114 - C6 -3PEW 6.0 DBP5_YEAST
45 PsiBlast_CBE 78.0432%-114 - C6 -3PEY 6.3 DBP5_YEAST
105 HHSearch 77.5732%-109 - C6 -3PEY 6.3 DBP5_YEAST
43 PsiBlast_CBE 76.4532%-117 - C6 -3RRM 5.8 DBP5_YEAST
101 HHSearch 71.8730%-106 - C6 -3I5X 7.5 MS116_YEAST
62 PsiBlast_CBE 67.5240%-144 - C6 -4PX9 5.7 DDX3X_HUMAN
64 PsiBlast_CBE 67.3140%-144 - C6 -4PX9 5.8 DDX3X_HUMAN
63 PsiBlast_CBE 67.0540%-144 - C6 -4PX9 5.3 DDX3X_HUMAN
55 PsiBlast_CBE 66.0143%-128 - C6 -3NBF 4.0 ?
51 PsiBlast_CBE 65.9743%-130 - C6 -2GXQ 6.1 ?
50 PsiBlast_CBE 65.6443%-128 - C6 -2GXS 5.9 ?
49 PsiBlast_CBE 65.4743%-127 - C6 -2GXS 4.8 ?
66 PsiBlast_CBE 65.3441%-134 - C6 -3FE2 5.5 DDX5_HUMAN
65 PsiBlast_CBE 65.3041%-137 - C6 -3FE2 6.4 DDX5_HUMAN
53 PsiBlast_CBE 65.1543%-132 - C6 -3NBF 4.3 ?
56 PsiBlast_CBE 64.9743%-133 - C6 -3MWL 4.0 ?
69 PsiBlast_CBE 64.9539%-133 - C6 -3BER 4.9 DDX47_HUMAN
68 PsiBlast_CBE 64.7738%-151 - C6 -3IUY 5.6 DDX53_HUMAN
58 PsiBlast_CBE 64.5543%-130 - C6 -3MWK 4.1 ?
52 PsiBlast_CBE 64.5543%-131 - C6 -3NBF 3.4 ?
70 PsiBlast_CBE 64.4336%-140 - C6 -2PL3 6.0 DDX10_HUMAN
54 PsiBlast_CBE 64.2643%-125 - C6 -3NBF 5.4 ?
67 PsiBlast_CBE 62.6838%-144 - C6 -3IUY 6.0 DDX53_HUMAN
71 PsiBlast_CBE 62.5333%-131 - C6 -1T6N 2.9 DX39B_HUMAN
72 PsiBlast_CBE 61.9633%-131 - C6 -1T6N 2.5 DX39B_HUMAN
79 PsiBlast_CBE 61.0132%-137 - C6 -3FMO 6.9 DD19B_HUMAN
78 PsiBlast_CBE 52.7634%-108 - C6 -3DKP 6.2 DDX52_HUMAN