@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5313: (2016-03-06 )
MTMNDEPQSSSLDNFWMPFTANRQFKARPRLLESAEGIHYIAQGGRRILDGTAGLWCCNAGHGRREISEAVARQIATLDYAPPFQMGHPLPFELAARLTEIAPPSLNKVFFTNSGSESADTALKIALAYQRAIGQGTRTRLIGRELGYHGVGFGGLSVGGMVNNRKAFSANLLPGVDHLPHTLDVARNAFTVGLPEHGVEKAEELERLVTLHGAENIAAVIVEPMSGSAGVVLPPKGYLQRLREITRKHGILLIFDEVITGFGRVGEAFAAQRWGVVPDLLTCAKGLTNGSIPMGAVFVDEKIHAAFMQGPQGAIEFFHGYTYSGHPVACAAALATLDIYRRDDLFQRAVELEGYWQDALFSLRDLPNVVDIRAVGLVGGVQLAPHADGPGKRGYDVFERCFWEHDLMVRVTGDIIAMSPPLIIDKPHIDQIVERLAQAIRASV

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]




POI_C_3(1WKG)
ARGD_THET8
[Raw transfer]




PPE_C_3(1WKH)
ARGD_THET8
[Raw transfer]




PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]




PXG_B_4(4BA5)
?
[Raw transfer]




TA8_B_4(4A6R)
?
[Raw transfer]




TA8_A_3(4A6R)
?
[Raw transfer]




PLP_X_2(3A8U)
OAPT_PSEPU
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




IPA_A_7(1MGV)
BIOA_ECOLI
[Raw transfer]




PLP_B_4(3I5T)
?
[Raw transfer]




PLP_B_4(3I5T)
?
[Raw transfer]




TA8_B_4(4A6R)
?
[Raw transfer]




IPA_B_8(1MGV)
BIOA_ECOLI
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




23 PsiBlast_CBE 95.0550%-114 - C1 -4BQ0 - BAUA_PSEAE -
21 PsiBlast_CBE 94.9950%-111 - C1 -4BQ0 - BAUA_PSEAE -
2 PsiBlast_PDB 94.6550%-112 - C1 -4B9B - BAUA_PSEAE -
3 PsiBlast_PDB 94.5850%-110 - C1 -4BQ0 - BAUA_PSEAE -
28 PsiBlast_CBE 94.3650%-113 - C1 -4B9B - BAUA_PSEAE -
1 PsiBlast_PDB 94.1650%-109 - C1 -4B98 - BAUA_PSEAE -
24 PsiBlast_CBE 94.0850%-111 - C1 -4B9B - BAUA_PSEAE -
29 PsiBlast_CBE 94.0350%-111 - C1 -4B9B - BAUA_PSEAE -
31 PsiBlast_CBE 93.8350%-109 - C1 -4B98 - BAUA_PSEAE -
33 PsiBlast_CBE 93.7550%-112 - C1 -4B98 - BAUA_PSEAE -
32 PsiBlast_CBE 93.6750%-109 - C1 -4B98 - BAUA_PSEAE -
26 PsiBlast_CBE 93.3850%-110 - C1 -4B9B - BAUA_PSEAE -
22 PsiBlast_CBE 93.3850%-110 - C1 -4BQ0 - BAUA_PSEAE -
27 PsiBlast_CBE 93.3250%-109 - C1 -4B9B - BAUA_PSEAE -
30 PsiBlast_CBE 93.0250%-112 - C1 -4B9B - BAUA_PSEAE -
4 PsiBlast_PDB 92.5448%-108 - C1 -3A8U - OAPT_PSEPU -
25 PsiBlast_CBE 91.8250%-109 - C1 -4B9B - BAUA_PSEAE -
84 HHSearch 91.3748%-105 - C1 -3A8U 4.2 OAPT_PSEPU
75 HHSearch 80.3037%-102 - C1 -3I5T 2.6 ?
5 PsiBlast_PDB 79.7639%-111 - C1 -3I5T 2.6 ?
7 PsiBlast_PDB 76.3035%-102 - C1 -4A6R 2.7 ?
35 PsiBlast_CBE 75.2335% -98 - C1 -4BA5 5.5 ?
45 PsiBlast_CBE 75.1735%-102 - C1 -4A6R 3.7 ?
91 HHSearch 72.0835%-116 * C1 *1VEF 3.9 ARGD_THET8
72 PsiBlast_CBE 69.5731%-106 - C1 -1MGV 3.5 BIOA_ECOLI
71 PsiBlast_CBE 69.5031%-105 - C1 -1MGV 3.2 BIOA_ECOLI
51 PsiBlast_CBE 69.0733%-114 - C1 -1WKH 3.9 ARGD_THET8
55 PsiBlast_CBE 68.9833%-115 - C1 -1VEF 3.9 ARGD_THET8
54 PsiBlast_CBE 68.7833%-115 - C1 -1WKG 3.3 ARGD_THET8
52 PsiBlast_CBE 68.6333%-113 - C1 -1WKH 4.2 ARGD_THET8
56 PsiBlast_CBE 68.3933%-115 - C1 -1VEF 3.9 ARGD_THET8
53 PsiBlast_CBE 67.1633%-111 - C1 -1WKG 2.9 ARGD_THET8