@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5366: (2016-03-06 )
MQNETASHGINFDALGRDRQSLDLASESVELEVPGLNLFYGAKQALFDVRMNIPKQRVTAFIGPSGCGKSTLLRCFNRMNDLVDGCRVEGEIRLDGHNIFAKGVDVAELRRRVGMVFQKPNPFPKSIYENVVYGLRIQGINKKRVLDEAVEWALKGAALWEEVKDRLHESALGLSGGQQQRLVIARTIAVEPEVLLLDEPCSALDPISTLKIEELIYELKSKFTIVIVTHNMQQAARVSDYTAFMYMGKLIEFGDTDTLFTNPAKKQTEDYITGRYG

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




124 HHSearch 87.9237%-104 - C1 -1B0U - HISP_SALTY -
74 PsiBlast_CBE 86.3533%-106 * C1 *1B0U 5.8 HISP_SALTY
12 PsiBlast_PDB 84.0034%-108 - C1 -4U00 6.0 ?
34 PsiBlast_CBE 83.5334%-104 - C1 -4U02 - ? -
35 PsiBlast_CBE 83.5134%-105 - C1 -4U02 - ? -
110 HHSearch 83.0232%-110 - C1 -3TUI - METN_ECOLI -
13 PsiBlast_PDB 82.1134%-105 - C1 -4U02 - ? -
129 Fugue 81.8231% -99 - C1 -3TUZ - METN_ECOLI -
33 PsiBlast_CBE 81.2234%-102 - C1 -4U02 - ? -
9 PsiBlast_PDB 80.2336%-105 - C1 -4YMU 5.2 ?
8 PsiBlast_PDB 80.2336%-103 - C1 -4YMT - ? -
137 Fugue 79.8735%-108 - C1 -1B0U - HISP_SALTY -
1 PsiBlast_PDB 79.7135%-106 - C1 -3C41 - ? -
22 PsiBlast_CBE 79.2835%-113 - C1 -3C4J 5.5 ?
29 PsiBlast_CBE 79.2535%-109 - C1 -2OLK 5.9 ?
11 PsiBlast_PDB 79.1736%-106 - C1 -4YMW - ? -
7 PsiBlast_PDB 79.1236%-105 - C1 -4YMS - ? -
2 PsiBlast_PDB 78.8835%-110 - C1 -2OLJ - ? -
32 PsiBlast_CBE 78.8336%-103 - C1 -4YMU 5.6 ?
10 PsiBlast_PDB 78.5936%-102 - C1 -4YMV 5.4 ?
27 PsiBlast_CBE 78.5535%-110 - C1 -2OLK 6.2 ?
31 PsiBlast_CBE 78.2636%-102 - C1 -4YMV 4.6 ?
21 PsiBlast_CBE 78.0435%-108 - C1 -3C41 6.4 ?
28 PsiBlast_CBE 77.7135%-107 - C1 -2OLK 6.3 ?
6 PsiBlast_PDB 77.5035%-106 - C1 -3C4J 6.7 ?
5 PsiBlast_PDB 76.6335%-104 - C1 -2Q0H 5.6 ?
30 PsiBlast_CBE 76.5235%-103 - C1 -2OLJ 5.8 ?
3 PsiBlast_PDB 75.9535%-107 - C1 -2OLK 6.1 ?
23 PsiBlast_CBE 74.4635%-108 - C1 -2Q0H 5.8 ?
89 PsiBlast_CBE 70.2935%-111 - C1 -3FVQ 4.6 FBPC_NEIG1
88 PsiBlast_CBE 68.9735%-111 - C1 -3FVQ 5.7 FBPC_NEIG1
104 PsiBlast_CBE 68.9034%-118 - C1 -1L2T 4.7 Y796_METJA
103 PsiBlast_CBE 68.4534%-120 - C1 -1L2T 4.8 Y796_METJA
106 PsiBlast_CBE 68.2034%-116 - C1 -3TIF 4.2 Y796_METJA
105 PsiBlast_CBE 66.6634%-121 - C1 -3TIF 4.6 Y796_METJA
70 PsiBlast_CBE 61.1331%-118 - C1 -1VCI 3.8 ?
95 PsiBlast_CBE 60.6833% -98 - C1 -2ONJ 5.9 Y1866_STAAM
96 PsiBlast_CBE 60.5233% -97 - C1 -2ONJ 5.8 Y1866_STAAM
83 PsiBlast_CBE 59.2131% -82 - C1 -3NHB 6.2
97 PsiBlast_CBE 59.1433%-101 - C1 -2HYD 3.7 Y1866_STAAM
98 PsiBlast_CBE 59.0733%-100 - C1 -2HYD 4.1 Y1866_STAAM
85 PsiBlast_CBE 57.6631% -80 - C1 -3NH9 5.7
84 PsiBlast_CBE 57.3931% -81 - C1 -3NHA 5.9
71 PsiBlast_CBE 54.6732% -84 - C1 -4AYX 4.2 ABCBA_HUMAN
69 PsiBlast_CBE 52.0232% -86 - C1 -4AYW 4.1 ABCBA_HUMAN
72 PsiBlast_CBE 51.4532% -83 - C1 -4AYT 4.8 ABCBA_HUMAN